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| Transfers |
 FC Halifax < > Bristol City |
| TDW | > | Sander BERGE | CM | NOR | 58 | 97 | 18/02/98 (19) | 83 | 1.90 | 88 | FC Halifax | | 2280 | | | | 0 | 0 | 3560 | 0 | Y | (t.37, Bristol City) |
 FC Oss < > 1,050,000 Arsenal |
| OXX | < | Abdelhak NOURI | CM | NED | 53 | 6 | 02/04/97 (20) | 88 | 1.70 | 58 | FC Oss | | | | | | | | 1580 | | | |
| VVV < > 3,260,000 Arsenal |
| MCU | < | Anwar EL GHAZI | RW | NED | 61 | 2 | 03/05/95 (22) | 88 | 1.89 | 86 | VVV | | | | | | | | 4180 | | | |
| Hull City 7,250,000 < > Chelsea |
| TTT | > | ALLAN Marques Loureiro | CM/DM | BRA | 65 | 99 | 08/01/91 (26) | 90 | 1.73 | 73 | Chelsea | 7.43 | 21400 | | | | 3 | 0 | 5315 | 2 | +4 | |
| Scunthorpe United 500,000 < > Chelsea |
| XNB | > | Stephan LICHTSTEINER | RWB | SUI | 66 | 96 | 16/01/84 (33) | 87 | 1.81 | 78 | Chelsea | 7.50 | 26820 | | | | 2 | 0 | 1655 | 3 | +2 | |
| EIK | < | Augusto Matías FERNÁNDEZ | CM/DM | ARG | 63 | 94 | 10/04/86 (31) | 90 | 1.77 | 71 | Scunthorpe United | 7.33 | 13540 | | | | 1 | 0 | 2810 | 0 | | |
| Northampton Town 8,100,000 < > Wrexham |
| UTP | > | Federico CHIESA | W/AM | ITA | 61/62 | 92 | 25/10/97 (20) | 79 | 1.75 | 70 | Wrexham | | 13060 | | | | 0 | 0 | 5825 | 0 | +4 | |
| Plymouth Argyle < > Wrexham |
| KSS | < | Lewis COOK | CM | ENG | 59/60 | 96 | 03/02/97 (20) | 78 | 1.75 | 66 | Wrexham | | 6620 | | | | 0 | 0 | 4370 | 0 | +3 | (t.12, Plymouth Argyle) |
| XEN | < | Pietro PELLEGRI | CS | ITA | 46/58 | 99 | 17/03/01 (116) | 60 | | | Wrexham | | 1020 | | | | 0 | 0 | 5170 | 0 | Y | (t.12, Plymouth Argyle) |
| Ajax 4,000,000 < > Shrewsbury Town |
| SBS | > | Kenny TETE | RB | NED | 64 | 94 | 09/10/95 (22) | 86 | 1.73 | 70 | Shrewsbury Town | | 18380 | | | | 0 | 0 | 4355 | 0 | +4 | |
| KUV | < | Jeffrey Van Homoet BRUMA | CB | NED | 61 | 2 | 13/11/91 (26) | 89 | 1.85 | 87 | Ajax | | | | | | | | 2020 | | | |
| Vitesse < > 3,390,000 Shrewsbury Town |
| NOA | < | Terence KONGOLO | CB/LB | NED | 62 | 10 | 14/02/94 (23) | 82 | 1.83 | 70 | Vitesse | | | | | | | | 2950 | | | |
| Rotherham United < > Tranmere Rovers |
| KWX | < | Trent ALEXANDER-ARNOLD | CM/RB | ENG | 60 | 93 | 07/10/98 (19) | 80 | 1.75 | 68 | Tranmere Rovers | | 4740 | | | | 0 | 0 | 4750 | 0 | +3 | (t.12, Rotherham United) |
| DMY | < | Joshua ONOMAH | W/AM | ENG | 55 | 95 | 24/04/97 (20) | 82 | 1.80 | 64 | Tranmere Rovers | | 4570 | | | | 0 | 0 | 2115 | 0 | +3 | (t.12, Rotherham United) |
| Hereford < > Tranmere Rovers |
| AFU | < | Ainsley MAITLAND-NILES | RM/CM | ENG | 53/54 | 97 | 29/08/97 (20) | 79 | 1.77 | 71 | Tranmere Rovers | | 3690 | | | | 1 | 0 | 1830 | 0 | +3 | (t.12, Hereford) |
| ILA | < | Ben WOODBURN | LW | WAL | 54 | 81 | 15/10/99 (18) | 82 | 1.75 | 72 | Tranmere Rovers | | 770 | | | | 0 | 0 | 2165 | 0 | Y | (t.12, Hereford) |
| FC Basel 1,400,000 < > QPR |
| JKJ | > | Manuel AKANJI | CB | SUI | 60 | 76 | 19/07/95 (22) | 85 | 1.87 | 85 | QPR | | 9230 | | | | 0 | 0 | 2460 | 1 | +4 | |
| HZQ | < | Florian LEJEUNE | CB | FRA | 61 | 12 | 20/05/91 (26) | 86 | 1.88 | 81 | FC Basel | | | | | | | | 2020 | | | |
 B.Mönchengladbach 1,750,000 < > QPR |
| CXQ | > | Mickaël CUISANCE | CM | FRA | 50 | 82 | 16/08/99 (18) | 89 | 1.81 | 74 | QPR | | 850 | | | | 0 | 0 | 1210 | 0 | Y | |
 Real Betis < > 830,000 Bristol Rovers |
| CFZ | < | Daniel Sánchez AYALA | CB | ESP | 55 | 15 | 07/11/90 (27) | 88 | 1.90 | 81 | Real Betis | | | | | | | | 755 | | | |
| Chester 5,250,000 < > Bristol Rovers |
| CIA | > | Andrija ZIVKOVIC | RW | SRB | 60 | 97 | 11/07/96 (21) | 90 | 1.70 | 66 | Bristol Rovers | 6.70 | 8460 | | | | 0 | 0 | 3995 | 3 | +3 | |
| Bristol City < > 1,295,000 Port Vale |
| WGR | < | Karl DARLOW | Gk | ENG | 58 | 95 | 08/10/90 (27) | 86 | 1.85 | 79 | Bristol City | | 5550 | | | | 0 | 0 | 1295 | 0 | | |
 Arbroath < > Port Vale |
| NYU | < | Greg KILTIE | WS | SCO | 48 | 98 | 18/01/97 (20) | 95 | | | Port Vale | | 710 | | | | 0 | 0 | 880 | 0 | Y | (t.37, Arbroath) |
 Jagiellonia < > 2,440,000 Bury |
| DHS | < | James MORRISON | RM/CM | SCO | 61 | 11 | 25/05/86 (31) | 89 | 1.78 | 64 | Jagiellonia | | | | | | | | 2085 | | | |
| Southend United 750,000 < > Peterborough Utd |
| YAD | > | Ezri KONSA Ngoyo | CB | ENG | 48 | 90 | 06/04/98 (19) | 92 | 1.83 | 77 | Peterborough Utd | | 630 | | | | 0 | 0 | 545 | 0 | Y | |
 KamAZ 1,750,000 < > Peterborough Utd |
| MMC | > | Joe WORRALL | CB | ENG | 55 | 91 | 10/01/97 (20) | 87 | 1.91 | 64 | Peterborough Utd | | 1830 | | | | 0 | 0 | 1435 | 0 | Y | |
| Stoke City 3,600,000 < > Peterborough Utd |
| CAD | > | Sam McQUEEN | LM/LWB | ENG | 58 | 99 | 06/02/95 (22) | 92 | 1.76 | 70 | Peterborough Utd | 6.62 | 5360 | | | | 10 | 1 | 2705 | 6 | +3 | |
| Liverpool < > 7,000,000 Gillingham |
| JEJ | < | Aaron RAMSEY | CM/AM | WAL | 65 | 94 | 26/12/90 (27) | 94 | 1.75 | 67 | Liverpool | 7.18 | 21300 | | | | 2 | 0 | 5000 | 3 | +2 | |
| JPW | > | Josip ILICIC | AM/W | SVN | 64 | 92 | 29/01/88 (29) | 87 | 1.90 | 79 | Gillingham | | 16880 | | | | 2 | 0 | 3790 | 0 | | |
| IOH | < | Joe HART | Gk | ENG | 64 | 94 | 19/04/87 (30) | 91 | 1.90 | 83 | Liverpool | 6.62 | 16880 | | | | 0 | 0 | 2465 | 0 | +1 | |
| HWP | > | BORJA Valero Iglesias | CM/AM | ESP | 64/65 | 92 | 12/01/85 (32) | 78 | 1.75 | 73 | Gillingham | | 23500 | | | | 2 | 0 | 2920 | 0 | | |
| SLL | > | Andrea CONSIGLI | Gk | ITA | 64 | 97 | 27/01/87 (30) | 89 | 1.89 | 81 | Gillingham | | 17880 | | | | 3 | 0 | 2465 | 0 | | |
| Loan/transfer listed |
| DPO | - | Matt TARGETT | LB | ENG | 58 | 96 | 18/09/95 (22) | 94 | 1.83 | 70 | Tottenham Hotspur | | 6040 | | | T | 0 | 0 | 1840 | 0 | +2 | |
| VIU | - | Sead HAKSABANOVIC | W | MNE | 54 | 95 | 04/05/99 (18) | 88 | 1.74 | 69 | FC Halifax | | 1320 | | | T | 0 | 0 | 2165 | 0 | Y | |
| LLB | - | Giovanni TROUPÉE | RB/CB | NED | 60 | 93 | 20/03/98 (19) | 90 | 1.80 | 72 | Shrewsbury Town | 7.12 | 4140 | | | T | 3 | 0 | 3225 | 0 | Y | |
| HNK | - | Hidde TER AVEST | RB/CB | NED | 60 | 92 | 20/05/97 (20) | 83 | 1.81 | 75 | Shrewsbury Town | 7.06 | 5020 | | | T | 2 | 0 | 2970 | 0 | Y | |
| IKN | - | Yann KARAMOH | CS | FRA | 60 | 95 | 08/07/98 (19) | 87 | 1.85 | 77 | Shrewsbury Town | 7.10 | 4000 | | | T | 9 | 0 | 5535 | 1 | Y | |
| Released |
| AAO | 16 | Tomás ROSICKÝ | AM/W | CZE | 58 | 13 | 04/10/80 (37) | 89 | 1.78 | 67 | (retired) | | | | | | | | F/t | | | |
| SFP | 16 | Ruslan ROTAN | CM/RM | UKR | 58 | 2 | 29/10/81 (36) | 88 | 1.76 | 69 | (retired) | | | | | | | | F/t | | | |
| EQP | 16 | Kim KÄLLSTRÖM | CM | SWE | 58 | 14 | 24/08/82 (35) | 90 | 1.81 | 79 | Lucchese | | | | | | | | 100 | | | |
| Loan callbacks |
| PPG | - | Rafik ZEKHNINI | St | NOR | 56 | 95 | 12/01/98 (19) | 90 | 1.79 | 63 | FC Halifax | 6.32 | 2450 | | | | 0 | 0 | 3105 | 3 | Y | |
| XTF | - | Matthijs DE LIGT | CB/CM | NED | 61 | 96 | 12/08/99 (18) | 82 | 1.88 | 89 | Wrexham | 6.61 | 2910 | | | | 3 | 0 | 4010 | 0 | Y | |
| BMM | 25+ | Levin ÖZTUNALI | W/AM | GER | 62 | 37 | 15/03/96 (21) | 81 | 1.76 | 74 | Norwich City | | 11500 | 4 | | | 0 | 0 | 5325 | 0 | +1 | |
