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| Transfers |
 Huddersfield Town 1,300,000 < > QPR |
| TXH | > | Silvan WIDMER | RWB | SUI | 63 | 98 | 05/03/93 (24) | 88 | 1.82 | 79 | QPR | 6.94 | 14840 | | | | 2 | 0 | 3025 | 1 | +4 | |
| OMI | < | Cheikhou KOUYATÉ | CM/CB | SEN | 62 | 94 | 21/12/89 (28) | 89 | 1.92 | 75 | Huddersfield Town | 7.17 | 11460 | | | | 3 | 0 | 3030 | 2 | | |
| Derby County < > Wrexham |
| BGE | < | Kai HAVERTZ | AM | GER | 62 | 94 | 11/06/99 (18) | 88 | 1.86 | 77 | Wrexham | | 4540 | | | | 0 | 0 | 6830 | 0 | Y | (t.14, Derby County) |
| Birmingham City < > Wrexham |
| XTF | < | Matthijs DE LIGT | CB/CM | NED | 61 | 96 | 12/08/99 (18) | 84 | 1.88 | 89 | Wrexham | 6.61 | 2910 | | | | 3 | 0 | 4010 | 0 | Y | (t.14, Birmingham City) |
| AZ 2,100,000 < > Shrewsbury Town |
| RUQ | > | Teun KOOPMEINERS | DM | NED | 54 | 86 | 28/02/98 (19) | 90 | 1.83 | 77 | Shrewsbury Town | | 1950 | | | | 0 | 0 | 1355 | 0 | Y | |
| Sportfr. Lotte < > 550,000 Shrewsbury Town |
| PHX | < | Dzenis BURNIC | CM/CB | GER | 48 | 2 | 22/05/98 (19) | 86 | 1.85 | 70 | Sportfr. Lotte | | | | | | | | 825 | | | |
| Bristol City < > Shrewsbury Town |
| RTQ | < | Justin KLUIVERT | W | NED | 56 | 94 | 05/05/99 (18) | 80 | 1.71 | 66 | Shrewsbury Town | | 2510 | | | | 0 | 0 | 2885 | 0 | Y | (t.39, Bristol City) |
| Gillingham 38,000,000 < > Tranmere Rovers |
| FFI | > | Eric DIER | DM/CB | ENG | 65 | 96 | 15/01/94 (24) | 94 | 1.88 | 65 | Tranmere Rovers | 6.63 | 23000 | | | | 0 | 0 | 4520 | 1 | +4 | |
| FWU | > | Ross BARKLEY | CM/AM | ENG | 63 | 97 | 05/12/93 (24) | 94 | 1.87 | 76 | Tranmere Rovers | 6.50 | 15840 | | | | 0 | 0 | 4455 | 2 | +4 | |
| UZK | < | Mark NOBLE | CM | ENG | 63 | 96 | 08/05/87 (30) | 93 | 1.80 | 76 | Gillingham | 7.03 | 13640 | | | | 1 | 0 | 3040 | 1 | | |
| 625,000 < > Tranmere Rovers |
| SXD | > | Callum HUDSON-ODOI | W/AM | ENG | 48 | 96 | 07/11/00 (117) | 95 | | | Tranmere Rovers | | 730 | | | | 0 | 0 | 980 | 0 | Y | |
| Coventry City 2,635,000 < > Tranmere Rovers |
| JJO | > | Ethan AMPADU | CB/DM | WAL | 49 | 53 | 14/09/00 (117) | 92 | 1.83 | 68 | Tranmere Rovers | | 750 | 1 | | | 0 | 0 | 760 | 0 | Y | |
| Gillingham 5,125,000 < > Chelsea |
| EZM | > | Wayne ROONEY | St/AM | ENG | 65 | 98 | 24/10/85 (32) | 93 | 1.77 | 78 | Chelsea | 6.76 | 21000 | | | | 0 | 0 | 3400 | 16 | +2 | |
 Sporting < > 2,780,000 Portsmouth |
| CEV | < | Jordan AMAVI | LB | FRA | 59/61 | 5 | 09/03/94 (23) | 77 | 1.76 | 70 | Sporting | | | | | | | | 2555 | | | |
 Deportivo < > 3,380,000 Reading |
| BDL | < | Manuel Agudo Duran, NOLITO | LW | ESP | 64 | 12 | 15/10/86 (31) | 88 | 1.72 | 65 | Deportivo | | | | | | | | 3255 | | | |
| Huddersfield Town 7,000,000 < > Bury |
| NOL | > | Yerry Fernando MINA González | CB | COL | 63 | 96 | 23/09/94 (23) | 88 | 1.93 | 75 | Bury | 6.66 | 14240 | | | | 6 | 1 | 3405 | 0 | +3 | |
| MPM | < | Winston REID | CB | NZL | 63 | 93 | 03/07/88 (29) | 96 | 1.90 | 87 | Huddersfield Town | | 14240 | 8 | | | 0 | 0 | 2225 | 0 | | |
| Huddersfield Town 6,600,000 < > Bury |
| IBA | > | Leandro Daniel PAREDES | CM | ARG | 63 | 96 | 29/06/94 (23) | 89 | 1.80 | 75 | Bury | 7.10 | 14240 | | | | 4 | 1 | 5015 | 2 | +3 | |
 St.Mirren < > Port Vale |
| HKL | < | Matthew KNOX | St | SCO | 47 | 93 | 22/12/99 (18) | 83 | | | Port Vale | | 590 | | | | 0 | 0 | 915 | 0 | Y | (t.39, St.Mirren) |
| Brechin City < > Port Vale |
| OEW | < | Harry SOUTTAR | CB | SCO | 42 | 94 | 22/10/98 (19) | 87 | 1.98 | 80 | Port Vale | | 290 | | | | 0 | 0 | 195 | 0 | Y | (t.8, Brechin City) |
| Harrogate Town < > 180,000 Swindon Town |
| CNH | < | Bailey PEACOCK-FARRELL | Gk | ENG | 44 | 10 | 29/10/96 (21) | 91 | 1.88 | 73 | Harrogate Town | | | | | | | | 260 | | | |
| Go Ahead Eagles < > 1,650,000 Manchester City |
| QIK | < | Fernando Martin FORESTIERI | AM/WS | ITA | 55 | 15 | 16/01/90 (27) | 97 | 1.72 | 67 | Go Ahead Eagles | | | | | | | | 1130 | | | |
| Benevento < > 700,000 Manchester City |
| IKB | < | Francesco LODI | CM | ITA | 60 | 2 | 23/03/84 (33) | 89 | 1.83 | 70 | Benevento | | | | | | | | 960 | | | |
| Northampton Town 12,000,000 < > Cheltenham Town |
| OJY | > | Wissam BEN YEDDER | St | FRA | 65 | 99 | 12/08/90 (27) | 92 | 1.70 | 68 | Cheltenham Town | 6.52 | 25300 | | | | 4 | 0 | 5830 | 7 | +3 | |
| 150,000 < > Peterborough Utd |
| LIQ | > | Jake TURNER | Gk | ENG | 43 | 85 | 25/02/99 (18) | 90 | | | Peterborough Utd | | 310 | | | | 0 | 0 | 290 | 0 | Y | |
| Hibernian 450,000 < > Peterborough Utd |
| MMM | > | Ryan PORTEOUS | CB | SCO | 44 | 91 | 25/03/99 (18) | 91 | | | Peterborough Utd | | 350 | | | | 0 | 0 | 315 | 0 | Y | |
| Loan/transfer listed |
| PPG | - | Rafik ZEKHNINI | St | NOR | 56 | 94 | 12/01/98 (20) | 90 | 1.79 | 63 | FC Halifax | 6.32 | 2450 | | | T | 0 | 0 | 2850 | 3 | Y | |
| EYH | - | Rúben Afonso Borges SEMEDO | CB/DM | POR | 62 | 92 | 04/04/94 (23) | 90 | 1.85 | 74 | Hartlepool United | 6.89 | 11260 | | | T | 1 | 0 | 2950 | 0 | +3 | |
| XQE | 1 | Aritz ELUSTONDO Irribarria | RB/CB | ESP | 60 | 94 | 11/01/94 (24) | 86 | 1.83 | 78 | Hartlepool United | | 8790 | | | T | 1 | 0 | 1955 | 0 | +4 | |
| CZH | - | James McARTHUR | DM/CM | SCO | 62 | 93 | 07/10/87 (30) | 95 | 1.77 | 69 | Bury | | 16040 | | | T | 1 | 0 | 1785 | 0 | +1 | |
| KSL | - | Adam FORSHAW | CM | ENG | 56 | 92 | 08/10/91 (26) | 95 | 1.85 | 71 | Blackburn Rovers | | 7110 | | | T | 0 | 0 | 1410 | 0 | +2 | |
| ERA | - | Sam GALLAGHER | CS | ENG | 53 | 87 | 15/09/95 (22) | 93 | 1.93 | 75 | Blackburn Rovers | | 3200 | | | T | 0 | 0 | 1505 | 0 | +1 | |
| FMF | - | Marc ROBERTS | CB | ENG | 54 | 96 | 26/07/90 (27) | 95 | 1.83 | 81 | Peterborough Utd | 6.47 | 3110 | | | T | 2 | 0 | 645 | 0 | +2 | |
| UFT | - | Marko GRUJIC | CM | SRB | 58 | 92 | 13/04/96 (21) | 92 | 1.91 | 82 | Swansea City | | 6820 | | | T | 0 | 0 | 2985 | 0 | +4 | |
| INQ | - | Jordy GASPAR | RB | FRA | 50/52 | 98 | 23/04/97 (20) | 77 | 1.72 | 58 | Swansea City | | 1370 | | | T | 0 | 0 | 920 | 0 | Y | |
| AER | - | Moussa DIABY | St | FRA | 44 | 83 | 07/07/99 (18) | 93 | | | Swansea City | | 410 | | | T | 0 | 0 | 585 | 0 | Y | |
| Released |
| SAW | 16 | Boli Bolingoli MBOMBO | LWB/LM | BEL | 53/55 | 7 | 01/07/95 (22) | 77 | 1.80 | 71 | SK Rapid Wien | | | | | | | | 1175 | | | |
| Loan callbacks |
| OOJ | - | Jérôme Junior ONGUÉNÉ | CB | FRA | 54 | 94 | 22/12/97 (20) | 87 | 1.90 | 80 | Port Vale | | 1720 | | | | 0 | 0 | 1240 | 0 | Y | |
