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| Transfers |
 Chelsea < > Manchester City |
| QPO | > | Riccardo MONTOLIVO | CM | ITA | 64 | 95 | 18/01/85 (33) | 90 | 1.81 | 65 | Chelsea | 6.42 | 22300 | | | | 2 | 0 | 1800 | 1 | +2 | (t.3, Manchester City) |
| Oldham Athletic 11,000,000 < > Manchester City |
| IHV | > | Carlos Joel SALCEDO Hernández | CB/RB | MEX | 63 | 87 | 29/09/93 (24) | 88 | 1.85 | 77 | Manchester City | 6.50 | 13740 | | | | 0 | 0 | 3025 | 1 | +4 | |
| UDZ | < | Willy BOLY | CB | FRA | 60 | 90 | 03/02/91 (27) | 89 | 1.96 | 93 | Oldham Athletic | 6.73 | 9120 | | | | 1 | 0 | 1640 | 0 | +1 | |
| KOO | > | Jorrit HENDRIX | DM | NED | 63 | 94 | 06/02/95 (23) | 89 | 1.76 | 70 | Manchester City | 6.97 | 14540 | | | | 1 | 0 | 3405 | 2 | +4 | |
 St.Pauli 2,500,000 < > Manchester City |
| QLK | > | Bastian OCZIPKA | LB | GER | 64 | 78 | 12/01/89 (29) | 89 | 1.84 | 72 | Manchester City | | 15780 | | | | 0 | 0 | 2575 | 0 | +3 | |
| BFH | < | António Alberto Bastos Pimparel, BETO | Gk | POR | 58 | 2 | 01/05/82 (35) | 92 | 1.80 | 80 | St.Pauli | | | | | | | | 695 | | | |
| GCB | < | Simone Andrea GANZ | CS | ITA | 54 | 4 | 21/09/93 (24) | 80 | 1.75 | 67 | St.Pauli | | | | | | | | 1365 | | | |
| Bristol City < > 1,750,000 Leeds United |
| JDV | < | Liam COOPER | CB | SCO | 56 | 58 | 30/08/91 (26) | 93 | 1.82 | 75 | Bristol City | 6.41 | 4470 | 4 | | | 2 | 0 | 950 | 1 | +3 | |
 Atlético Madrid 4,500,000 < > Leeds United |
| ADQ | > | Sebastián COATES Nion | CB | URU | 64 | 79 | 07/10/90 (27) | 85 | 1.96 | 85 | Leeds United | | 17480 | | | | 0 | 0 | 2940 | 0 | +3 | |
| Nice 8,500,000 < > Leeds United |
| IWQ | > | Patrick BURNER | FB | FRA | 58 | 79 | 11/04/96 (21) | 92 | 1.68 | 61 | Leeds United | | 6280 | | | | 0 | 0 | 2030 | 0 | +4 | |
| VHL | < | Martin SKRTEL | CB | SVK | 63 | 14 | 15/12/84 (33) | 90 | 1.86 | 79 | Nice | | | | | | | | 1045 | | | |
| JOO | > | Allan SAINT-MAXIMIN | W | FRA | 59/61 | 77 | 12/03/97 (20) | 77 | 1.73 | 67 | Leeds United | | 9140 | | | | 0 | 0 | 5045 | 0 | +4 | |
| Real Sociedad 1,500,000 < > Hartlepool United |
| TFI | > | Yuri BERCHICHE Izeta | LB | ESP | 63 | 83 | 10/02/90 (28) | 92 | 1.80 | 77 | Hartlepool United | | 13140 | | | | 0 | 0 | 2385 | 0 | +4 | |
| VDG | < | LUIS HERNÁNDEZ Rodriguez | RB/CB | ESP | 62 | 14 | 14/08/89 (28) | 89 | 1.82 | 76 | Real Sociedad | | | | | | | | 2060 | | | |
| Barcelona B 800,000 < > Hartlepool United |
| UDC | > | Juan MIRANDA González | LB | ESP | 48 | 68 | 19/01/00 (118) | 85 | 1.85 | 74 | Hartlepool United | | 790 | | | | 0 | 0 | 600 | 0 | Y | |
| Elche < > 2,840,000 Hartlepool United |
| IAR | < | JONATHAN VIERA Ramos | LW/WS | ESP | 62 | 14 | 21/10/89 (28) | 91 | 1.70 | 64 | Elche | | | | | | | | 3030 | | | |
 Brøndby 2,300,000 < > QPR |
| BMF | > | Boubakary SOUMARÉ | CM | FRA | 52 | 97 | 27/02/99 (18) | 88 | | | QPR | | 1350 | | | | 0 | 0 | 1620 | 0 | Y | |
| Nancy < > 1,050,000 QPR |
| OVB | < | Luca ZIDANE | Gk | FRA | 51/52 | 1 | 13/05/98 (19) | 78 | 1.81 | 78 | Nancy | | | | | | | | 1075 | | | |
| Peterborough Utd < > 3,000,000 Tottenham Hotspur |
| DPO | < | Matt TARGETT | LB | ENG | 58 | 95 | 18/09/95 (22) | 95 | 1.83 | 70 | Peterborough Utd | | 6700 | | | | 0 | 0 | 1840 | 0 | +3 | |
| Bournemouth < > 5,030,000 Bury |
| RHL | < | Tom CARROLL | CM/LM | ENG | 62 | 94 | 28/05/92 (25) | 92 | 1.77 | 71 | Bournemouth | | 11260 | | | | 0 | 0 | 3645 | 0 | +3 | |
| Nice 735,000 < > Shrewsbury Town |
| BRF | > | Lamine DIABY | St | FRA | 42 | 79 | 19/01/01 (117) | 89 | 1.83 | 76 | Shrewsbury Town | | 300 | | | | 0 | 0 | 475 | 0 | Y | |
| Roda JC < > 3,540,000 Shrewsbury Town |
| LZM | < | Justin HOOGMA | CB | NED | 60 | 10 | 11/06/98 (19) | 92 | 1.90 | 81 | Roda JC | | | | | | | | 3225 | | | |
| Sheffield Weds. < > Shrewsbury Town |
| EBD | < | Donny VAN DE BEEK | DM | NED | 61 | 96 | 18/04/97 (20) | 90 | 1.81 | 67 | Shrewsbury Town | 7.25 | 8820 | | | | 0 | 0 | 3425 | 1 | +2 | (t.21, Sheffield Weds.) |
| AAM | < | Maxime LOPEZ | AM | FRA | 61 | 92 | 04/12/97 (20) | 80 | 1.67 | 58 | Shrewsbury Town | | 13260 | | | | 0 | 0 | 5045 | 0 | +3 | (t.21, Sheffield Weds.) |
 Dynamo 3,800,000 < > Barnsley |
| ONH | > | Volodymyr SHEPELYEV | CM | UKR | 61 | 85 | 01/06/97 (20) | 86 | 1.84 | 73 | Barnsley | | 10820 | | | | 0 | 0 | 5045 | 0 | +4 | |
| YXY | < | Harry ARTER | CM | IRL | 62 | 1 | 28/12/89 (28) | 93 | 1.77 | 79 | Dynamo | | | 8 | | | | | 3030 | | | |
| Sampdoria 7,225,000 < > Chelsea |
| OAN | > | Simone ZAZA | CS | ITA | 64 | 82 | 25/06/91 (26) | 88 | 1.82 | 75 | Chelsea | | 18380 | | | | 0 | 0 | 5360 | 0 | +3 | |
| Milton Keynes 7,250,000 < > Bristol Rovers |
| UKZ | > | Philipp MAX | LWB | GER | 62 | 93 | 30/09/93 (24) | 86 | 1.78 | 77 | Bristol Rovers | | 12760 | | | | 0 | 0 | 2620 | 0 | +3 | |
| Hull City 3,900,000 < > Bristol Rovers |
| WHM | > | César Jasib MONTES Castro | CB | MEX | 58 | 99 | 24/02/97 (20) | 87 | 1.91 | 70 | Bristol Rovers | 6.50 | 3310 | | | | 0 | 0 | 2225 | 0 | Y | |
| Laval 7,750,000 < > Peterborough Utd |
| AIB | > | Fousseyni DIABATÉ | St | MLI | 58 | 75 | 18/10/95 (22) | 91 | 1.76 | 65 | Peterborough Utd | | 6070 | | | | 0 | 0 | 3145 | 0 | +3 | |
| Piacenza 650,000 < > Bristol City |
| EGB | > | Callum BRITTAIN | RM/RB | ENG | 45 | 96 | 12/03/97 (20) | 92 | | | Bristol City | | 380 | | | | 0 | 0 | 470 | 0 | Y | |
| Cambridge United 4,000,000 < > Leyton Orient |
| LWV | > | RAFAEL TOLOI | CB | BRA | 64 | 94 | 10/10/90 (27) | 89 | 1.87 | 85 | Leyton Orient | 7.02 | 17480 | | | | 1 | 0 | 2940 | 3 | +2 | |
| Coventry City 6,000,000 < > Leyton Orient |
| OWH | > | Carlos Alberto VELA Garrido | St/AM | MEX | 64 | 97 | 01/03/89 (28) | 94 | 1.75 | 66 | Leyton Orient | 6.60 | 16680 | | | | 1 | 0 | 4730 | 14 | +2 | |
| Northampton Town 35,500,000 < > Manchester United |
| AEV | > | Toby ALDERWEIRELD | CB/RB | BEL | 67 | 96 | 02/03/89 (28) | 94 | 1.86 | 81 | Manchester United | 7.29 | 36460 | | | | 2 | 0 | 4230 | 0 | +3 | |
| TWG | < | Salvatore BOCCHETTI | CB/LB | ITA | 63 | 93 | 30/11/86 (31) | 88 | 1.78 | 70 | Northampton Town | 6.98 | 12740 | | | | 3 | 0 | 1910 | 1 | +1 | |
| Jong Ajax 1,550,000 < > Manchester United |
| DLZ | > | Carel EITING | DM | NED | 53 | 96 | 11/02/98 (20) | 84 | 1.79 | 76 | Manchester United | | 1400 | | | | 0 | 0 | 1070 | 0 | Y | |
| Benfica B 785,000 < > Manchester United |
| YCQ | > | FRANCISCO Reis FERREIRA | CB | POR | 49 | 87 | 26/03/97 (20) | 89 | 1.88 | 76 | Manchester United | | 820 | | | | 0 | 0 | 580 | 0 | Y | |
| Loan/transfer listed |
| MRV | - | Jack HAMILTON | Gk | SCO | 53 | 93 | 22/03/94 (23) | 85 | | | Swindon Town | | 2840 | | | T | 0 | 0 | 915 | 0 | +1 | |
| RZT | - | Jason CUMMINGS | WS | SCO | 52 | 94 | 01/08/95 (22) | 83 | 1.78 | 68 | Swindon Town | | 2180 | | | T | 0 | 0 | 1295 | 0 | | |
| KMN | - | Duncan WATMORE | W/WS | ENG | 54 | 98 | 08/03/94 (23) | 94 | 1.75 | 72 | Swindon Town | 7.21 | 5780 | | | T | 3 | 0 | 1335 | 7 | +1 | |
| RJY | - | Jordan SMITH | Gk | ENG | 54 | 91 | 08/12/94 (23) | 89 | 1.85 | 75 | Blackburn Rovers | | 1440 | | | T | 0 | 0 | 1065 | 0 | +2 | |
| UVY | - | Joe BENNETT | LWB | ENG | 55 | 87 | 28/03/90 (27) | 96 | 1.77 | 65 | Peterborough Utd | 7.09 | 2870 | | | T | 0 | 0 | 755 | 0 | +3 | |
| Released |
| TBK | 16 | Max O'LEARY | Gk | ENG | 40 | 15 | 10/10/96 (21) | 92 | 1.85 | 78 | Southport | | | | | | | | 115 | | | |
| IMQ | 16 | LUCAS FERNANDES da Silva | RW | BRA | 51/54 | 0 | 20/09/97 (20) | 74 | 1.76 | 71 | São Paulo | | | | | | | | 1830 | | | |
| MFY | 16 | Matty FRYATT | St | ENG | 47 | 6 | 05/03/86 (31) | 93 | 1.77 | 77 | (retired) | | | | | | | | 235 | | | |
| Loan callbacks |
| FQS | - | Scott WRIGHT | CS | SCO | 48 | 99 | 08/08/97 (20) | 93 | 1.75 | 65 | Port Vale | | 730 | | | | 0 | 0 | 880 | 0 | Y | |
