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| Transfers |
 Colón 6,500,000 < >  Plymouth Argyle |
| MBE | > | Marko DMITROVIC | Gk | SRB | 62 | 81 | 24/01/92 (26) | 89 | 1.90 | 81 | Plymouth Argyle | | 11760 | | | | 0 | 0 | 2590 | 0 | +3 | |
 Girona 6,500,000 < > Plymouth Argyle |
| TMO | > | Yassine BOUNOU | Gk | MAR | 58/62 | 79 | 05/04/91 (27) | 74 | 1.88 | 70 | Plymouth Argyle | | 12460 | | | | 0 | 0 | 2330 | 0 | +3 | |
 Spal < > 260,000 Manchester City |
| DUF | < | Francesco PISANO | RB | ITA | 54 | 1 | 29/04/86 (32) | 88 | 1.74 | 67 | Spal | | | | | | | | 325 | | | |
| Newcastle United 47,500,000 < > Leeds United |
| BHU | > | Dries MERTENS | St | BEL | 67 | 99 | 06/05/87 (31) | 89 | 1.69 | 61 | Leeds United | 6.50 | 34360 | | | | 2 | 0 | 5865 | 8 | +2 | |
| Huddersfield Town 6,250,000 < > Leeds United |
| RQF | > | Odsonne ÉDOUARD | CS | FRA | 56 | 92 | 16/01/98 (20) | 90 | 1.87 | 83 | Leeds United | | 5060 | | | | 1 | 0 | 2850 | 0 | +4 | |
 Santos 1,750,000 < > Norwich City |
| PIJ | > | YURI ALBERTO Monteiro da Silva | RW | BRA | 44 | 95 | 18/03/01 (117) | 84 | 1.83 | 77 | Norwich City | | 400 | | | | 0 | 0 | 545 | 0 | Y | |
| Rayo Vallecano 4,100,000 < > Hartlepool United |
| LMI | > | Francisco José Beltran Peinado, FRAN BELTRÁN | CM | ESP | 56 | 73 | 03/02/99 (19) | 89 | 1.67 | 64 | Hartlepool United | | 2310 | | | | 0 | 0 | 2665 | 0 | Y | |
| Sheffield Weds. < > Bury |
| DPJ | < | Angus GUNN | Gk | ENG | 45/54 | 95 | 22/01/96 (22) | 63 | 1.96 | 77 | Bury | | 330 | | | | 0 | 0 | 1155 | 0 | | (t.15, Sheffield Weds.) |
| Forest Green < > Swindon Town |
| WXV | < | Ryan SWEENEY | CB | IRL | 47 | 95 | 15/04/97 (21) | 84 | 1.93 | 87 | Swindon Town | | 580 | | | | 0 | 0 | 370 | 0 | Y | (t.33, Forest Green) |
| Londrina < > 1,690,000 Blackburn Rovers |
| RQU | < | ALLAN Rodrigues de Souza | AM/LW | BRA | 54/55 | 9 | 03/03/97 (21) | 79 | 1.72 | 70 | Londrina | | | | | | | | 1925 | | | |
 FC Midtjylland 3,500,000 < > Bristol Rovers |
| ISM | > | Pierluigi GOLLINI | Gk | ITA | 60 | 94 | 18/03/95 (23) | 85 | | | Bristol Rovers | | 9870 | | | | 0 | 0 | 2545 | 0 | +3 | |
| WBA 2,750,000 < > Bristol Rovers |
| DRS | > | Adama TRAORÉ Diarra | RW | ESP | 56 | 92 | 25/01/96 (22) | 93 | 1.78 | 75 | Bristol Rovers | | 5290 | | | | 0 | 0 | 2015 | 0 | +3 | |
 Rangers 9,750,000 < > Bristol City |
| PDN | > | David BATES | CB/RB | SCO | 55 | 90 | 05/10/96 (21) | 81 | 1.93 | 74 | Bristol City | | 4160 | | | | 0 | 0 | 1305 | 0 | +3 | |
| Southampton < > 220,000 Bristol City |
| ZXH | < | George DOWLING | CM | ENG | 39 | 94 | 08/10/98 (19) | 95 | | | Southampton | | 190 | | | | 0 | 0 | 190 | 0 | Y | |
 Östersund 3,000,000 < > Bristol City |
| GGE | > | Saman GHODDOS | AM/LW | IRN | 58 | 96 | 06/09/93 (24) | 87 | 1.76 | 67 | Bristol City | | 6650 | | | | 0 | 0 | 2140 | 0 | +3 | |
 Slovan Liberec 1,800,000 < > Sunderland |
| KKL | > | Martin GRAICIAR | St | CZE | 50 | 82 | 11/04/99 (19) | 85 | 1.84 | 73 | Sunderland | | 930 | | | | 0 | 0 | 1295 | 0 | Y | |
| Juventus 2,000,000 < > Exeter City |
| NFL | > | Leandro FERNANDES | CM/AM | NED | 39 | 81 | 25/12/99 (18) | 88 | | | Exeter City | | 190 | | | | 0 | 0 | 220 | 0 | Y | |
| NLA | > | Sandro KULENOVIC | CS | CRO | 48 | 82 | 04/12/99 (18) | 89 | 1.88 | 76 | Exeter City | | 710 | | | | 0 | 0 | 1055 | 0 | Y | |
| 465,000 < > Notts County |
| LUN | > | Glen JOHNSON | WB | ENG | 61 | 92 | 23/08/84 (33) | 92 | 1.78 | 70 | Notts County | | 9220 | | | | 0 | 0 | 755 | 0 | +1 | |
| Loan/transfer listed |
| AWW | - | ARDA Turan | W/AM | TUR | 64 | 98 | 30/01/87 (31) | 89 | 1.76 | 72 | Crewe Alexandra | | 20800 | | | T | 2 | 0 | 3255 | 0 | | |
| FRN | - | Diogo José Teixeira da Silva, JOTA | AM/WS | POR | 60 | 86 | 04/12/96 (21) | 82 | 1.78 | 71 | Crewe Alexandra | | 9090 | | | T | 0 | 0 | 3995 | 0 | | |
| Released |
| IUE | 25+ | Christian WETKLO | Gk | GER | 56 | 1 | 11/01/80 (38) | 90 | 1.90 | 93 | FC Schalke 04 II | | | | | | | | 95 | | | |
| SEK | <25 | Leon BRITTON | CM | ENG | 60 | 0 | 16/09/82 (35) | 92 | 1.65 | 61 | Barry Town United | | | | | | | | 180 | | | |
| Loan callbacks |
| HDP | - | Jean-Kévin AUGUSTIN | CS | FRA | 60 | 93 | 16/06/97 (20) | 87 | 1.77 | 69 | Reading | | 4560 | | | | 0 | 0 | 5090 | 0 | Y | |
| EBD | - | Donny VAN DE BEEK | DM | NED | 64 | 97 | 18/04/97 (21) | 86 | 1.81 | 67 | Shrewsbury Town | 7.27 | 8820 | | | | 1 | 0 | 4795 | 1 | +1 | |
| NWI | - | Josh EARL | LM/LB | ENG | 52 | 93 | 24/10/98 (19) | 92 | 1.91 | 78 | Tottenham Hotspur | | 1390 | | | | 0 | 0 | 1490 | 0 | Y | |
