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| Transfers |
 Queen of the Sth. 180,000 < >  Oldham Athletic |
| THF | > | Joshua RAE | Gk | SCO | 42 | 85 | 17/10/00 (23) | 96 | | | Oldham Athletic | | 520 | | | | 0 | 0 | 135 | 0 | +4 | |
| 200,000 < > Oldham Athletic |
| MTR | > | Lukas Bornhøft JENSEN | Gk | DEN | 44 | 96 | 18/03/99 (25) | 93 | 1.99 | 92 | Oldham Athletic | | 640 | | | | 0 | 0 | 150 | 0 | +4 | |
| 135,000 < > Oldham Athletic |
| AHU | > | Josh ROBERTSON | CM | ENG | 36 | 93 | 30/03/05 (19) | 96 | | | Oldham Athletic | | 120 | | | | 0 | 0 | 100 | 0 | Y | |
 Westerlo < > 780,000 Wigan Athletic |
| WPZ | < | Calvin RAMSAY | RB | SCO | 51 | 7 | 31/07/03 (20) | 91 | | | Westerlo | | | | | | | | 790 | | | |
| West Ham United < > 640,000 Wigan Athletic |
| YIG | < | Charlie HUGHES | CB | ENG | 50 | 88 | 16/10/03 (20) | 89 | | | West Ham United | | 1030 | | | | 0 | 0 | 675 | 0 | Y | |
| Celtic 925,000 < > Wigan Athletic |
| OBG | > | Rocco VATA | AM | IRL | 46 | 80 | 18/04/05 (19) | 95 | | | Wigan Athletic | | 450 | | | | 0 | 0 | 610 | 0 | Y | |
| Motherwell < > 1,030,000 Forest Green |
| NPN | < | John SOUTTAR | RB/CB | SCO | 58/60 | 12 | 25/09/96 (27) | 77 | 1.85 | 75 | Motherwell | | | | | | | | 1640 | | | |
| Worksop Town < > 140,000 Forest Green |
| USN | < | Kevin ZEFI | W/CS | IRL | 38 | 2 | 11/02/05 (19) | 91 | 1.76 | 75 | Worksop Town | | | | | | | | 155 | | | |
 Bayer Leverkusen 8,000,000 < > Sheffield Weds. |
| URS | > | Exequiel Alejandro PALACIOS | CM | ARG | 65 | 97 | 05/10/98 (25) | 87 | 1.77 | 66 | Sheffield Weds. | | 20600 | | | | 0 | 0 | 5625 | 0 | +4 | |
 Lyon 6,000,000 < > Southampton |
| SRS | > | Malo GUSTO | RB/RM | FRA | 63 | 98 | 19/05/03 (20) | 92 | | | Southampton | | 15740 | | | | 0 | 0 | 4545 | 0 | +3 | |
| 100,000 < > Exeter City |
| BVZ | > | Joel NDALA | W | ENG | 38 | 96 | 31/05/06 (17) | 95 | | | Exeter City | | 170 | | | | 0 | 0 | 205 | 0 | Y | |
| Bradford City 8,500,000 < > Exeter City |
| SVF | > | Folarin BALOGUN | CS | USA | 63 | 94 | 03/06/01 (22) | 94 | | | Exeter City | | 14340 | | | | 3 | 0 | 6510 | 1 | +3 | |
 Adelaide United 905,000 < > Liverpool |
| PJZ | > | Nestory IRANKUNDA | W | AUS | 46 | 77 | 09/02/06 (18) | 94 | | | Liverpool | | 530 | | | | 0 | 0 | 670 | 0 | Y | |
 Valencia Mestalla 1,195,000 < > Liverpool |
| MDN | > | Yarek GASIOROWSKI Hernandis | CB | ESP | 51 | 80 | 12/01/05 (19) | 85 | | | Liverpool | | 1120 | | | | 0 | 0 | 865 | 0 | Y | |
| Newcastle United 7,500,000 < > Stoke City |
| AJM | < | Aaron WAN-BISSAKA | RB | ENG | 64 | 99 | 26/11/97 (26) | 92 | 1.83 | 72 | Newcastle United | | 16080 | | | | 1 | 0 | 3125 | 0 | | |
| VFV | > | Alejandro GARNACHO | W | ARG | 63 | 93 | 01/07/04 (19) | 92 | 1.80 | 80 | Stoke City | | 15340 | | | | 1 | 0 | 7295 | 1 | +3 | |
| West Ham United 4,900,000 < > Hull City |
| OJQ | > | Owen WIJNDAL | LB/CB | NED | 64 | 91 | 28/11/99 (24) | 90 | 1.76 | 65 | Hull City | | 16280 | | | | 2 | 0 | 3490 | 0 | +3 | |
| Wolves 4,100,000 < > Hull City |
| GPI | < | Bobby DECORDOVA-REID | RW/RWB | JAM | 64 | 99 | 02/02/93 (31) | 89 | 1.70 | 68 | Wolves | | 17980 | | | | 0 | 0 | 3255 | 0 | | |
| JMU | > | Morgan GIBBS-WHITE | AM/W | ENG | 64 | 98 | 27/01/00 (24) | 95 | 1.78 | 60 | Hull City | | 17280 | | | | 4 | 0 | 5145 | 0 | +3 | |
 Maccabi Netanya 2,510,000 < > Notts County |
| TIM | > | Omri GANDELMAN | AM | ISR | 56 | 89 | 16/05/00 (23) | 92 | 1.90 | 82 | Notts County | | 3690 | | | | 0 | 0 | 1800 | 0 | +3 | |
| Hyde United < > 10,000 Notts County |
| TKR | < | Richard BRINDLEY | RB/CB | ENG | 43 | 13 | 05/05/93 (30) | 94 | 1.79 | 77 | Hyde United | | | | | | | | 15 | | | |
| Aberdeen < > 1,350,000 Sunderland |
| HFW | < | Nathan WOOD | CB | ENG | 53 | 2 | 31/05/02 (21) | 85 | 1.88 | 72 | Aberdeen | | | | | | | | 970 | | | |
| PSV 6,395,000 < > Crystal Palace |
| LOK | > | Crysencio SUMMERVILLE | St | NED | 59 | 92 | 30/10/01 (22) | 88 | | | Crystal Palace | | 8060 | | | | 0 | 0 | 3640 | 0 | +4 | |
| OH Leuven < > 380,000 Crystal Palace |
| XBO | < | Lucas LISSENS | CB | BEL | 49 | 2 | 25/07/01 (22) | 86 | 1.83 | 74 | OH Leuven | | | | | | | | 460 | | | |
| 800,000 < > Fulham |
| APQ | > | Andy MORAN | AM | IRL | 52 | 89 | 15/10/03 (20) | 96 | 1.77 | 73 | Fulham | | 1370 | | | | 0 | 0 | 1365 | 0 | Y | |
| 600,000 < > Fulham |
| HBD | > | Bobby THOMAS | CB | ENG | 55 | 95 | 30/01/01 (23) | 92 | 1.86 | 77 | Fulham | | 3540 | | | | 0 | 0 | 1050 | 0 | | |
| 50,000 < > Norwich City |
| STE | > | Harry LEE | Gk | ENG | 38 | 81 | 22/12/04 (19) | 89 | | | Norwich City | | 170 | | | | 0 | 0 | 95 | 0 | Y | |
| 275,000 < > Stockport County |
| FKE | > | Connor TAYLOR | CB | ENG | 50 | 92 | 25/10/01 (22) | 95 | | | Stockport County | | 1410 | | | | 0 | 0 | 540 | 0 | +1 | |
| Loan/transfer listed |
| MOS | - | FÁBIO Daniel Soares SILVA | CS | POR | 61 | 94 | 19/07/02 (21) | 94 | 1.85 | 75 | Liverpool | | 11920 | | | T | 1 | 0 | 5375 | 0 | +1 | |
| GCH | - | Loubadhe Abakar SYLLA | CB | CIV | 61 | 99 | 25/12/02 (21) | 89 | 1.83 | 78 | Stoke City | | 9310 | | | T | 0 | 0 | 3130 | 0 | | |
| TQG | - | Badredine BOUANANI | W/AM | ALG | 58 | 95 | 12/08/04 (19) | 83 | | | Stoke City | | 5870 | | | T | 0 | 0 | 3560 | 0 | | |
| HHM | - | Mohamed EL AROUCH | CM | FRA | 46 | 94 | 06/04/04 (20) | 92 | 1.66 | 56 | Stoke City | | 530 | | | T | 0 | 0 | 550 | 0 | Y | |
| ECP | - | Mayckel LAHDO | LW | SWE | 56 | 94 | 30/12/02 (21) | 86 | | | Hull City | | 4670 | | | T | 4 | 0 | 2230 | 0 | | |
| JPS | - | Daniel BACHMANN | Gk | AUT | 60 | 96 | 09/07/94 (29) | 90 | 1.91 | 81 | Hull City | | 8880 | | | T | 0 | 0 | 1460 | 0 | | |
| LGO | - | Hannibal MEJBRI | LW/AM | TUN | 58 | 98 | 21/01/03 (21) | 92 | 1.84 | 70 | Hull City | | 3820 | | | T | 1 | 0 | 2985 | 0 | +2 | |
| LSU | - | Jay GORTER | Gk | NED | 55 | 91 | 30/05/00 (23) | 91 | 1.90 | 79 | Hull City | | 2950 | | | T | 0 | 0 | 1235 | 0 | +2 | |
| TDO | - | Jordan ZEMURA | LB | ZIM | 61 | 95 | 14/11/99 (24) | 91 | | | Hull City | | 10220 | | | T | 2 | 0 | 2265 | 0 | | |
| RCJ | - | Aden BALDWIN | CB | ENG | 44 | 95 | 10/06/97 (26) | 92 | 1.83 | 70 | Notts County | | 640 | | | T | 0 | 0 | 90 | 0 | +2 | |
| ZWB | - | Kyle CAMERON | CB/LB | SCO | 45 | 98 | 15/01/97 (27) | 94 | 1.90 | 76 | Notts County | | 720 | | | T | 1 | 1 | 105 | 0 | +2 | |
| RJB | - | Dean BOUZANIS | Gk | AUS | 45 | 92 | 02/10/90 (33) | 93 | 1.85 | 84 | Notts County | | 770 | | | T | 0 | 0 | 35 | 0 | | |
| ZXS | - | Aaron NEMANE | RWB | ENG | 45 | 98 | 26/09/97 (26) | 92 | 1.70 | 62 | Notts County | | 720 | | | T | 0 | 0 | 120 | 0 | | |
| Released |
| KDX | <20 | Wisdom AMEY | CB | ITA | 44 | 10 | 11/08/05 (18) | 83 | | | Bologna | | | | | | | | 315 | | | |
| VII | 25+ | Connell RAWLINSON | CB | ENG | 43 | 1 | 22/09/91 (32) | 92 | 1.91 | 89 | SC Pfullendorf | | | | | | | | F/t | | | |
| XXN | 16 | Marvelous Antolín Garzón, MARVEL | CB | ESP | 41 | 13 | 07/01/03 (21) | 85 | 1.84 | 75 | R.Madrid Castilla | | | | | | | | 110 | | | |
| NKC | 16 | Alex SMITHIES | Gk | ENG | 50 | 12 | 05/03/90 (34) | 95 | 1.85 | 84 | Mansfield Town | | | | | | | | 170 | | | |
| HQO | 25+ | RAÚL GARCÍA Escudero | AM/CS | ESP | 61 | 9 | 11/07/86 (37) | 90 | 1.83 | 80 | Osasuna | | | | | | | | F/t | | | |
| Loan callbacks |
| FVA | 25+ | C.J. EGAN-RILEY | CB/DM | ENG | 54 | 94 | 02/01/03 (21) | 89 | 1.83 | 70 | Burnley | | 3200 | | | | 1 | 0 | 1125 | 0 | | |
| ABT | - | Harrison ASHBY | RWB | SCO | 50 | 95 | 14/11/01 (22) | 82 | 1.79 | 72 | Sheffield Weds. | | 790 | | | | 0 | 0 | 540 | 0 | +2 | |
