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| Transfers |
 River Plate 1,100,000 < >  Wycombe Wanderers |
| MWA | > | Jonathan URRETAVIZCAYA | WS | URU | 46 | 88 | 19/03/90 (18) | 86 | 1.74 | 62 | Wycombe Wanderers | | 490 | | | | 0 | 0 | 790 | 0 | Y | |
 Rangers < > 3,410,000 Everton |
| UDJ | < | Damien JOHNSON | CM/RM | NIR | 60 | 8 | 18/11/78 (29) | 94 | 1.75 | 63 | Rangers | | | | | | | | 2825 | | | |
 Bordeaux < > Coventry City |
| QEA | < | Armand TRAORÉ | LB | FRA | 54 | 95 | 08/10/89 (18) | 90 | 1.70 | 67 | Coventry City | | 1750 | | | | 0 | 0 | 1470 | 0 | Y | (t.27, Bordeaux) |
 Valencia 725,000 < > Bradford City |
| DBY | > | Ángel MONTORO | CM | ESP | 46 | 85 | 25/06/88 (20) | 86 | 1.80 | 77 | Bradford City | | 580 | | | | 0 | 0 | 550 | 0 | Y | |
| 110,000 < > Bradford City |
| QQL | > | Aidan WHITE | LB | ENG | 40 | 97 | 10/10/91 (16) | 89 | | | Bradford City | | 230 | | | | 0 | 0 | 190 | 0 | Y | |
| Stevenage Borough 965,000 < > Chester City |
| IOX | > | Chris O'GRADY | CS | ENG | 49 | 77 | 25/01/86 (22) | 94 | 1.85 | 80 | Chester City | | 1200 | | | | 0 | 0 | 820 | 0 | +1 | |
| Grays Athletic 1,110,000 < > Chesterfield |
| XAS | > | Paul CONNOLLY | RB | ENG | 55 | 91 | 29/09/83 (24) | 90 | 1.82 | 74 | Chesterfield | | 3380 | | | | 0 | 0 | 920 | 0 | +1 | |
| Dundee United 1,410,000 < > Colchester United |
| GYA | > | Jim PATERSON | LB | SCO | 58 | 97 | 25/09/79 (28) | 90 | 1.80 | 82 | Colchester United | | 5850 | | | | 0 | 0 | 1130 | 0 | +1 | |
| Loan/transfer listed |
| PYZ | - | Ben TURNER | CB | ENG | 54 | 99 | 21/01/88 (20) | 91 | 1.93 | 90 | Everton | | 1830 | | | T | 0 | 0 | 1240 | 0 | Y | |
| VHL | - | Martin SKRTEL | CB | SVK | 65 | 96 | 15/12/84 (23) | 89 | 1.86 | 79 | Everton | 7.00 | 24000 | | | T | 3 | 0 | 4520 | 1 | | |
| DXT | - | Tomasz KUSZCZAK | Gk | POL | 61 | 97 | 20/03/82 (26) | 93 | 1.90 | 84 | Everton | | 10220 | | | T | 2 | 0 | 2245 | 0 | | |
| EYI | - | Piotr TROCHOWSKI | LW/WS | GER | 64 | 95 | 22/03/84 (24) | 92 | 1.68 | 68 | Everton | | 17080 | | | T | 0 | 0 | 5145 | 0 | | |
| IBG | - | Milan BAROS | St | CZE | 64 | 99 | 28/10/81 (26) | 89 | 1.84 | 76 | Everton | | 14880 | | | T | 3 | 0 | 5360 | 0 | | |
| GHB | - | Aleksandr PRUDNIKOV | CS | RUS | 54 | 96 | 26/02/89 (19) | 88 | 1.81 | 80 | Darlington | | 1540 | | | T | 0 | 0 | 2320 | 0 | Y | |
| Released |
| QFW | 16 | Domenico CRISCITO | CB | ITA | 62 | 2 | 30/12/86 (21) | 92 | 1.83 | 70 | Genoa | | | | | | | | 3610 | | | |
