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| Transfers |
 Juve Next Gen 3,500,000 < >  Rangers |
| XDR | > | Dean HUIJSEN | CB | NED | 55 | 91 | 14/04/05 (18) | 83 | | | Rangers | | 2280 | | | | 0 | 0 | 1700 | 0 | Y | |
 Bordeaux < > Rangers |
| SIM | < | Mahamadou DIAWARA | CM | FRA | 46/51 | 95 | 17/02/05 (19) | 70 | | | Rangers | | 270 | | | | 0 | 0 | 1285 | 0 | Y | (t.42, Bordeaux) |
 OB 2,000,000 < > Rangers |
| YJI | > | Tobias SLOTSAGER | CB | DEN | 50 | 99 | 01/01/06 (18) | 84 | | | Rangers | | 910 | | | | 0 | 0 | 815 | 0 | Y | |
| Inter 3,650,000 < > Lens |
| FKT | > | José Luis GAYÁ Peńa | LWB | ESP | 66 | 98 | 25/05/95 (28) | 89 | 1.72 | 68 | Lens | 7.39 | 29220 | | | | 5 | 0 | 3670 | 4 | +2 | |
| XPS | < | Jean-Kévin DUVERNE | CB | FRA | 62 | 92 | 12/07/97 (26) | 83 | 1.84 | 71 | Inter | | 13660 | | | | 0 | 0 | 2340 | 0 | | |
| 1,750,000 < > Lens |
| RDD | > | Anton KADE | RM | GER | 57 | 79 | 17/01/04 (20) | 88 | 1.85 | 72 | Lens | | 2850 | | | | 0 | 0 | 2830 | 0 | Y | |
| FC Schalke 04 < > SC Heerenveen |
| MTV | < | Arijon IBRAHIMOVIC | CM | GER | 51/55 | 92 | 11/12/05 (18) | 73 | | | SC Heerenveen | | 640 | | | | 0 | 0 | 2500 | 0 | Y | (t.42, FC Schalke 04) |
Juventus 18,000,000 < >  FC Basel |
| SGG | > | EMERSON Aparecido Leite de Souza Junior | RWB | BRA | 64 | 81 | 14/01/99 (25) | 92 | 1.81 | 79 | FC Basel | | 17080 | 1 | | | 0 | 0 | 3305 | 0 | +2 | |
| HPN | > | Jorge Luiz Frello Filho, JORGINHO | CM | ITA | 66 | 78 | 21/12/91 (32) | 94 | 1.80 | 65 | FC Basel | 7.20 | 28120 | | | | 3 | 0 | 3385 | 0 | +2 | |
| DRY | > | RÚBEN Diogo da Silva NEVES | CM/DM | POR | 65 | 97 | 13/03/97 (27) | 89 | 1.80 | 75 | FC Basel | 6.71 | 23100 | | | | 6 | 0 | 5000 | 1 | +2 | |
| Inter 8,000,000 < > FC Basel |
| OVF | > | Manuel NEUER | Gk | GER | 69 | 85 | 27/03/86 (38) | 89 | 1.92 | 85 | FC Basel | 6.95 | 54480 | | | | 1 | 0 | 1270 | 0 | +2 | |
| NXQ | > | Thomas MÜLLER | AM | GER | 68 | 99 | 13/09/89 (34) | 91 | 1.86 | 74 | FC Basel | 7.38 | 41940 | | | | 0 | 0 | 2040 | 0 | +2 | |
 Houston Dynamo < > 1,990,000 Lille |
| YWC | < | Michael 'Amir' MURILLO Bermudez | RB | PAN | 61 | 15 | 12/05/96 (27) | 92 | 1.83 | 75 | Houston Dynamo | | | | | | | | 1900 | | | |
| Valencia 15,000,000 < > Lille |
| OJS | > | HUGO DURO Perales | St | ESP | 63 | 97 | 10/11/99 (24) | 86 | 1.77 | 70 | Lille | 6.58 | 15040 | | | | 3 | 1 | 5195 | 5 | +4 | |
| 25,000,000 < > Benfica |
| QXZ | < | Matt O'RILEY | CM | DEN | 62 | 14 | 21/11/00 (23) | 88 | 1.87 | 77 | | | | | | | | | 4340 | | | |
 Györi ETO < >  IFK Göteborg |
| QSB | < | Nikola MILENKOVIC | CB/RB | SRB | 65 | 94 | 12/10/97 (26) | 89 | 1.95 | 91 | IFK Göteborg | | 21500 | | | | 3 | 0 | 3605 | 1 | +1 | (t.24, Györi ETO) |
 Widzew Lódz < > IFK Göteborg |
| TRD | < | Antoine MENDY | CB | FRA | 54/55 | 90 | 27/05/04 (19) | 79 | 1.87 | 75 | IFK Göteborg | | 2020 | | | | 0 | 0 | 1570 | 0 | Y | (t.30, Widzew Lódz) |
Săo Bento < >  Arsenal |
| BOY | < | PEDRO Henrique Silva dos Santos | LW | BRA | 52/55 | 91 | 05/02/06 (18) | 74 | 1.71 | 65 | Arsenal | | 1360 | | | | 0 | 0 | 2500 | 0 | Y | (t.5, Săo Bento) |
| Lyon 12,000,000 < > Deportivo |
| THS | > | MARCOS LEONARDO Santos Almeida | St | BRA | 62 | 50 | 02/05/03 (20) | 88 | 1.78 | 71 | Deportivo | 6.45 | 6530 | 3 | | | 3 | 0 | 6795 | 1 | Y | |
| Norwich City 1,950,000 < > SV Werder Bremen |
| YQQ | > | Andrew OMOBAMIDELE | CB | IRL | 55 | 85 | 23/06/02 (21) | 88 | | | SV Werder Bremen | | 3690 | | | | 0 | 0 | 1305 | 0 | +4 | |
| 1,750,000 < > SV Werder Bremen |
| KJN | > | Shea CHARLES | CB/DM | NIR | 54 | 93 | 05/11/03 (20) | 92 | | | SV Werder Bremen | | 1890 | | | | 0 | 0 | 1240 | 0 | Y | |
| 2,900,000 < > SV Werder Bremen |
| YHG | > | Isaac PRICE | CM | NIR | 55 | 83 | 26/09/03 (20) | 87 | | | SV Werder Bremen | | 2110 | | | | 0 | 0 | 2115 | 0 | Y | |
 FC Liefering 6,750,000 < > Zaragoza |
| FNB | > | Maurits KJĆRGAARD | CM | DEN | 61 | 64 | 26/06/03 (20) | 93 | 1.89 | 70 | Zaragoza | | 10920 | | | | 0 | 0 | 5045 | 0 | +1 | |
| Le Havre 4,750,000 < > Aston Villa |
| JQR | > | Brice SAMBA | Gk | FRA | 65 | 89 | 25/04/94 (29) | 88 | 1.86 | 80 | Aston Villa | | 22100 | | | | 0 | 0 | 3010 | 0 | +4 | |
| 1,200,000 < > Bayern München |
| QXJ | > | Robin HACK | AM | GER | 58 | 97 | 27/08/98 (25) | 92 | 1.76 | 69 | Bayern München | | 7160 | | | | 0 | 0 | 2025 | 0 | | |
| 1,000,000 < > Hansa Rostock |
| OFA | > | Johannes EGGESTEIN | St | GER | 56 | 78 | 08/05/98 (25) | 95 | 1.83 | 75 | Hansa Rostock | | 4580 | | | | 0 | 0 | 1745 | 0 | | |
| Vitesse 4,570,000 < > Napoli |
| ATX | > | Andrea CAMBIASO | WB | ITA | 64 | 88 | 20/02/00 (24) | 91 | | | Napoli | | 16780 | | | | 0 | 0 | 3490 | 0 | +1 | |
| Released |
| VPU | 16 | José Gomes, ZÉ GOMES | St | POR | 52 | 15 | 08/04/99 (24) | 81 | 1.77 | 68 | Chornomorets | | | | | | | | 1005 | | | |
| RCT | <25 | JOSÉ Miguel da Rocha FONTE | CB | POR | 64 | 13 | 22/12/83 (40) | 89 | 1.90 | 83 | Sporting Braga | | | | | | | | F/t | | | |
| Loan callbacks |
| XEL | - | Castello LUKEBA | CB | FRA | 64 | 94 | 17/12/02 (21) | 90 | | | Paris SG | | 16640 | | | | 2 | 0 | 4795 | 0 | +3 | |
| EDK | - | Myron VAN BREDERODE | St | NED | 60 | 93 | 06/07/03 (20) | 94 | | | SC Heerenveen | | 7540 | | | | 0 | 0 | 5090 | 0 | | |
