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| Transfers |
 Weymouth < > 500,000 Cheltenham Town |
| AJC | < | Robbie THRELFALL | LB | ENG | 47 | 12 | 28/11/88 (19) | 95 | 1.72 | 70 | Weymouth | | | | | | | | 465 | | | |
 Boca Juniors 2,650,000 < > Lincoln City |
| PXL | > | Luciano MONZON | CB/LB | ARG | 56 | 82 | 13/04/87 (21) | 86 | 1.79 | 75 | Lincoln City | | 4880 | | | | 0 | 0 | 1515 | 0 | +2 | |
 Hertha BSC Berlin 5,250,000 < > Lincoln City |
| MNF | > | Solomon OKORONKWO | CS | NGA | 58 | 82 | 02/03/87 (21) | 95 | 1.82 | 77 | Lincoln City | | 7010 | | | | 0 | 0 | 3475 | 0 | +2 | |
 PSV 650,000 < > Lincoln City |
| IVD | > | Arne NILIS | AM | BEL | 41 | 80 | 27/02/91 (17) | 90 | 1.75 | 64 | Lincoln City | | 250 | | | | 0 | 0 | 340 | 0 | Y | |
 Peñarol 7,850,000 < > Coventry City |
| KGU | > | Cristian RODRÍGUEZ | LW | URU | 63 | 90 | 30/09/85 (22) | 91 | 1.75 | 72 | Coventry City | | 15040 | | | | 0 | 0 | 5580 | 0 | +2 | |
 Palermo 780,000 < > Coventry City |
| FFA | > | Paolo CARBONARO | St | ITA | 42 | 86 | 16/02/89 (19) | 87 | 1.78 | 68 | Coventry City | | 310 | | | | 0 | 0 | 390 | 0 | Y | |
| Swansea City 750,000 < > Chelsea |
| BOZ | > | Reneil SAPPLETON | WS | ENG | 40 | 90 | 08/12/89 (18) | 93 | | | Chelsea | | 220 | | | | 0 | 0 | 315 | 0 | Y | |
| Gillingham < > Rochdale |
| EZH | > | Khalid BOULAHROUZ | CB/FB | NED | 65 | 95 | 28/12/81 (26) | 88 | 1.79 | 77 | Rochdale | | 20500 | | | | 2 | 0 | 3605 | 0 | +4 | |
| OIY | < | Andrei ARSHAVIN | AM/WS | RUS | 67 | 99 | 29/05/81 (27) | 93 | 1.72 | 62 | Gillingham | 6.80 | 30760 | | | | 6 | 0 | 6655 | 14 | +4 | |
| XLR | > | DIEGO LÓPEZ Rodríguez | Gk | ESP | 64 | 95 | 03/11/81 (26) | 87 | 1.95 | 87 | Rochdale | | 18180 | | | | 0 | 0 | 3440 | 0 | +4 | |
| Sampdoria 1,525,000 < > Crewe Alexandra |
| RHB | > | Andrea POLI | CM | ITA | 44 | 92 | 29/09/89 (18) | 90 | 1.81 | 70 | Crewe Alexandra | | 420 | | | | 0 | 0 | 495 | 0 | Y | |
| Sunderland 4,300,000 < > Southend United |
| HXY | > | Marco CASSETTI | RM | ITA | 64 | 97 | 29/05/77 (31) | 88 | 1.87 | 77 | Southend United | 7.17 | 18980 | | | | 2 | 0 | 3255 | 3 | +3 | |
| 200,000 < > Southend United |
| RGL | > | Grant BASEY | LB | WAL | 46 | 77 | 30/11/88 (19) | 92 | | | Southend United | | 490 | | | | 0 | 0 | 395 | 0 | Y | |
| Inter < > Chelsea |
| JMZ | < | Franco DI SANTO | CS | ARG | 59 | 95 | 07/04/89 (19) | 92 | 1.94 | 78 | Chelsea | | 4140 | | | | 0 | 0 | 4790 | 0 | Y | (t.12, Inter) |
| Barcelona < > Chelsea |
| NOR | < | MIKI ROQUE | CB | ESP | 50 | 94 | 08/07/88 (20) | 82 | 1.86 | 71 | Chelsea | | 990 | | | | 0 | 0 | 675 | 0 | Y | (t.12, Barcelona) |
 Oita Trinita < > 1,230,000 Wrexham |
| QAM | < | ROBERTO Andrade | CM | BRA | 53 | 11 | 24/04/88 (20) | 80 | | | Oita Trinita | | | | | | | | 1580 | | | |
| Derby County 24,800,000 < > Aston Villa |
| WAI | > | DECO | CM/AM | POR | 68 | 96 | 27/08/77 (30) | 87 | 1.74 | 73 | Aston Villa | 6.57 | 40940 | | 1 | | 10 | 0 | 6265 | 11 | +2 | |
| Reading 10,000,000 < > Aston Villa |
| BPG | > | Julien FAUBERT | RM/RWB | FRA | 64 | 94 | 01/08/83 (25) | 93 | 1.78 | 75 | Aston Villa | 6.62 | 18780 | | | | 2 | 1 | 4875 | 0 | +2 | |
| Sporting Gijón < > Huddersfield Town |
| PJC | < | Javier VELAYOS | CM | ESP | 48 | 94 | 06/04/87 (21) | 87 | | | Huddersfield Town | | 1470 | | | | 0 | 0 | 675 | 0 | +1 | (t.6, Sporting Gijón) |
| Brighton & HA 500,000 < > Huddersfield Town |
| KPD | > | Andreas WOLF | CB/FB | GER | 63 | 97 | 12/06/82 (26) | 89 | 1.82 | 77 | Huddersfield Town | 6.91 | 15240 | | | | 2 | 0 | 2705 | 0 | +4 | |
| GZZ | < | Claudio BRAVO | Gk | CHI | 57 | 90 | 13/04/83 (25) | 84 | 1.84 | 84 | Brighton & HA | | 5630 | | | | 0 | 0 | 1385 | 0 | | |
| KFG | < | Andreas HINKEL | RB | GER | 62 | 95 | 26/03/82 (26) | 93 | 1.83 | 74 | Brighton & HA | | 11460 | | | | 0 | 0 | 2340 | 0 | | |
| Milton Keynes < > 17,500,000 Blackpool |
| AKK | < | Michael WOODS | LW | ENG | 45 | 97 | 06/04/90 (18) | 89 | 1.82 | 79 | Milton Keynes | | 390 | | | | 0 | 0 | 575 | 0 | Y | |
| BPB | < | Ben TOZER | LB | ENG | 48 | 91 | 15/03/90 (18) | 92 | | | Milton Keynes | | 670 | | | | 0 | 0 | 600 | 0 | Y | |
| FJA | < | Febian BRANDY | WS | ENG | 43 | 92 | 04/02/89 (19) | 95 | 1.65 | 64 | Milton Keynes | | 330 | | | | 0 | 0 | 455 | 0 | Y | |
| HNH | < | Scott SINCLAIR | WS | ENG | 56 | 93 | 25/03/89 (19) | 86 | 1.77 | 63 | Milton Keynes | | 2210 | | | | 0 | 0 | 3105 | 0 | Y | |
| Recreativo Huelva 1,400,000 < > Chester City |
| NYN | > | Luis VALENCIA | RM | ECU | 63 | 96 | 05/08/85 (23) | 89 | 1.75 | 70 | Chester City | | 14040 | | | | 0 | 0 | 5015 | 0 | +4 | |
| IVT | < | Marco DI VAIO | St | ITA | 62 | 8 | 15/07/76 (32) | 92 | 1.80 | 76 | Recreativo Huelva | | | | | | | | 2175 | | | |
| PRA | < | CARLOS Jorge MARTINS | AM/CM | POR | 63 | 13 | 29/04/82 (26) | 91 | 1.72 | 73 | Recreativo Huelva | | | | | | | | 3980 | | | |
| Sunderland 6,530,000 < > Chester City |
| NYV | > | Simon VUKCEVIC | CM/AM | MNT | 62 | 95 | 29/01/86 (22) | 87 | 1.79 | 78 | Chester City | | 12460 | | | | 8 | 0 | 4830 | 1 | +4 | |
| Swindon Town 12,670,000 < > Milton Keynes |
| OHS | > | Nicolas DIEUZE | CM/DM | FRA | 63 | 97 | 07/02/79 (29) | 91 | 1.82 | 81 | Milton Keynes | 6.95 | 12540 | | | | 3 | 0 | 3275 | 1 | +2 | |
| MYP | > | Iván DE LA PEÑA | CM/AM | ESP | 62 | 94 | 06/05/76 (32) | 89 | 1.69 | 69 | Milton Keynes | 6.32 | 10960 | | | | 15 | 0 | 1865 | 2 | +2 | |
| GLB | > | ABEL Fernando | RB | POR | 63 | 91 | 22/12/78 (29) | 86 | 1.79 | 75 | Milton Keynes | | 13440 | | | | 3 | 0 | 2225 | 0 | +2 | |
| XTC | > | Radoslav KOVÁC | CB/DM | CZE | 63 | 96 | 27/11/79 (28) | 88 | 1.88 | 81 | Milton Keynes | 6.50 | 13540 | | | | 7 | 1 | 2385 | 1 | +2 | |
| Sheffield United 9,000,000 < > Milton Keynes |
| XHK | > | Tony Mario SYLVA | Gk | SEN | 63 | 97 | 17/05/75 (33) | 90 | 1.85 | 77 | Milton Keynes | 6.57 | 12540 | | | | 3 | 0 | 1760 | 0 | +1 | |
| EJD | > | Oguchi ONYEWU | CB | USA | 63 | 91 | 13/05/82 (26) | 95 | 1.92 | 91 | Milton Keynes | 6.57 | 11740 | | | | 4 | 0 | 2705 | 0 | +1 | |
| WRW | > | Jean-Sébastien JAURÈS | LB/LM | FRA | 63 | 96 | 30/09/77 (30) | 87 | 1.76 | 77 | Milton Keynes | 7.09 | 13840 | | | | 3 | 0 | 2070 | 3 | +1 | |
| XUH | < | FELIPE Jorge | LM/LWB | BRA | 62 | 97 | 02/09/77 (30) | 88 | 1.75 | 69 | Sheffield United | 6.98 | 11860 | | | | 2 | 0 | 2625 | 4 | | |
| YJL | > | Daniele CONTI | CM | ITA | 62 | 98 | 09/01/79 (29) | 87 | 1.75 | 71 | Milton Keynes | 6.66 | 11360 | | | | 1 | 1 | 2825 | 5 | +1 | |
| TSV München 1860 885,000 < > Sheffield Wednesday |
| KWQ | > | Alexander EBERLEIN | CB | GER | 49 | 97 | 14/01/88 (20) | 86 | 1.86 | 77 | Sheffield Wednesday | | 830 | | | | 0 | 0 | 580 | 0 | Y | |
| Nacional < > Sheffield Wednesday |
| KIZ | < | Gary KAGELMACHER | CB | URU | 45 | 98 | 21/04/88 (20) | 90 | 1.83 | 85 | Sheffield Wednesday | | 460 | | | | 0 | 0 | 295 | 0 | Y | (t.31, Nacional) |
| Vélez Sársfield < > Sheffield Wednesday |
| QOI | < | Óscar TREJO | CS | ARG | 57 | 94 | 26/04/88 (20) | 80 | 1.80 | 79 | Sheffield Wednesday | | 1610 | | | | 0 | 0 | 3295 | 0 | Y | (t.37, Vélez Sársfield) |
| Marseille 900,000 < > Bournemouth |
| BPX | > | Guy GNABOUYOU | CS | FRA | 45 | 89 | 01/12/89 (18) | 84 | 1.83 | 82 | Bournemouth | | 480 | | | | 0 | 0 | 680 | 0 | Y | |
| Kaiserslautern < > Walsall |
| TRU | < | Benedikt HÖWEDES | CB | GER | 54 | 97 | 29/02/88 (20) | 85 | 1.87 | 75 | Walsall | | 1340 | | | | 0 | 0 | 1240 | 0 | Y | (t.37, Kaiserslautern) |
| Guingamp < > Walsall |
| JYY | < | Moustapha SALIFOU | AM | TOG | 55 | 97 | 01/06/83 (25) | 93 | 1.80 | 69 | Walsall | | 3950 | | | | 0 | 0 | 1285 | 0 | +1 | (t.1, Guingamp) |
| Roda JC < > 1,120,000 Leyton Orient |
| ATX | < | Michael JANSEN | CB | NED | 57 | 4 | 10/06/84 (24) | 90 | 1.84 | 76 | Roda JC | | | | | | | | 1250 | | | |
 Besiktas < > 3,600,000 Leyton Orient |
| FSK | < | Diomansy KAMARÀ | St | SEN | 61 | 13 | 08/11/80 (27) | 93 | 1.81 | 72 | Besiktas | | | | | | | | 3250 | | | |
| Nacional < > 2,320,000 Exeter City |
| LFQ | < | Juan SURRACO | AM | URU | 54 | 1 | 14/08/87 (20) | 81 | 1.76 | 69 | Nacional | | | | | | | | 1830 | | | |
| SC Heerenveen 3,200,000 < > Leicester City |
| HTI | > | Boy WATERMAN | Gk | NED | 60 | 92 | 24/01/84 (24) | 82 | 1.88 | 83 | Leicester City | | 9350 | | | | 0 | 0 | 2345 | 0 | +4 | |
| VfB Stuttgart 8,200,000 < > Oldham Athletic |
| KNR | > | Sven ULREICH | Gk | GER | 57 | 88 | 03/08/88 (20) | 91 | 1.89 | 80 | Oldham Athletic | | 3100 | | | | 0 | 0 | 2065 | 0 | Y | |
| Loan/transfer listed |
| JQJ | - | Pedro ALCALÁ | CB | ESP | 45 | 94 | 19/03/89 (19) | 86 | | | Crewe Alexandra | | 430 | | | T | 0 | 0 | 335 | 0 | Y | |
| QKH | - | Dorian DERVITE | CB | FRA | 48 | 98 | 25/07/88 (20) | 86 | 1.92 | 85 | Crewe Alexandra | | 700 | | | T | 0 | 0 | 490 | 0 | Y | |
| KFG | 25+ | Andreas HINKEL | RB | GER | 62 | 95 | 26/03/82 (26) | 93 | 1.83 | 74 | Brighton & HA | | 11460 | | | | 0 | 0 | 2340 | 0 | | |
| OMU | - | Silvestre VARELA | W | POR | 57/59 | 94 | 02/02/85 (23) | 76 | 1.80 | 75 | Portsmouth | | 5110 | | | T | 0 | 0 | 2805 | 0 | +2 | |
| QBK | - | Matthew CONNOLLY | CB | ENG | 52 | 91 | 24/09/87 (20) | 84 | | | Portsmouth | | 1240 | | | T | 0 | 0 | 920 | 0 | Y | |
| XHV | - | Jamie MOLE | WS | ENG | 50 | 94 | 01/06/88 (20) | 84 | 1.77 | 75 | Portsmouth | | 900 | | | T | 0 | 0 | 1185 | 0 | Y | |
| Loan callbacks |
| BPK | - | Marko ARNAUTOVIC | CS | AUT | 54 | 95 | 19/04/89 (19) | 83 | 1.92 | 83 | Bournemouth | | 1200 | | | | 0 | 0 | 2320 | 0 | Y | |
| SDE | - | Alessio CERCI | CS | ITA | 57/58 | 95 | 23/07/87 (21) | 78 | 1.80 | 78 | Chelsea | | 3520 | | | | 0 | 0 | 3475 | 0 | Y | |
| APA | - | Ashkan DEJAGAH | LW/WS | GER | 62 | 96 | 05/07/86 (22) | 91 | 1.81 | 74 | Rochdale | 6.59 | 11220 | | | | 4 | 0 | 4830 | 10 | +3 | |
| GNT | - | BRUNO Alexandre GAMA | W/WS | POR | 58 | 97 | 15/11/87 (20) | 89 | | | Wrexham | 6.75 | 2270 | | | | 2 | 0 | 3275 | 0 | Y | |
| BHI | - | Sidney SAM | St | GER | 50 | 93 | 31/01/88 (20) | 79 | 1.75 | 66 | Bournemouth | | 930 | | | | 0 | 0 | 1185 | 0 | Y | |
| JRU | - | Deni ALAR | St | CRO | 44/48 | 88 | 18/09/90 (17) | 71 | 1.85 | 68 | Huddersfield Town | | 260 | | | | 0 | 0 | 1145 | 0 | Y | |
| PDG | - | Lucas TRECARICHI | AM/LW | ARG | 54 | 93 | 12/02/91 (17) | 80 | 1.73 | 62 | Preston North End | | 1740 | | | | 0 | 0 | 2330 | 0 | Y | |
| YXV | - | Filip DJORDJEVIC | CS | SRB | 50/56 | 99 | 28/09/87 (20) | 69 | 1.86 | 80 | Lincoln City | | 540 | | | | 0 | 0 | 2850 | 0 | Y | |
