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| Transfers |
 Feyenoord < > 4,480,000  Milton Keynes |
| OFU | < | Jhon VAN BEUKERING | CS | NED | 60 | 0 | 29/09/83 (24) | 88 | 1.79 | 80 | Feyenoord | | | | | | | | 3350 | | | |
 Annan Athletic < > 180,000 Milton Keynes |
| JYD | < | Andy LINDEGAARD | RW/RWB | ENG | 47 | 4 | 10/09/80 (27) | 92 | 1.72 | 71 | Annan Athletic | | | 2 | | | | | 295 | | | |
| Ipswich Town < > 1,000,000 Milton Keynes |
| QRS | < | Wade SMALL | LW | ENG | 53 | 99 | 23/02/84 (24) | 90 | 1.78 | 70 | Ipswich Town | | 2880 | | | | 1 | 1 | 1005 | 0 | +2 | |
| Norwich City 7,000,000 < > Derby County |
| MBD | > | Pavel NEDVED | LM/CM | CZE | 67 | 48 | 30/08/72 (35) | 89 | 1.75 | 73 | Derby County | 6.78 | 33160 | 2 | | | 5 | 1 | 740 | 7 | +2 | |
| QGB | > | Petr BYSTROV | LM | RUS | 63 | 98 | 15/07/79 (29) | 90 | 1.78 | 70 | Derby County | 6.91 | 14340 | | | | 5 | 0 | 3275 | 6 | +3 | |
| Inverness CT < > 3,120,000 Nottingham Forest |
| QCE | < | Lee McCULLOCH | LM/CS | SCO | 62 | 11 | 14/05/78 (30) | 87 | 1.80 | 78 | Inverness CT | | | | | | | | 2625 | | | |
 Sedan 4,250,000 < > Bournemouth |
| PFM | > | Frédéric NIMANI | CS | FRA | 56 | 80 | 08/10/88 (19) | 91 | 1.91 | 87 | Bournemouth | | 2330 | | | | 0 | 0 | 3105 | 0 | Y | |
| Lens 3,000,000 < > Scunthorpe United |
| MFN | > | Rod FANNI | RB/CB | FRA | 62 | 92 | 06/12/81 (26) | 85 | 1.83 | 76 | Scunthorpe United | | 11460 | | | | 0 | 0 | 2340 | 0 | +4 | |
| FPZ | < | Liam ROSENIOR | FB | ENG | 62 | 9 | 09/07/84 (24) | 91 | 1.75 | 72 | Lens | | | | | | | | 2620 | | | |
| Rushden & Diamonds < > 120,000 Scunthorpe United |
| VSK | < | Darren RANDOLPH | Gk | IRL | 44 | 11 | 12/05/87 (21) | 88 | 1.88 | 89 | Rushden & Diamonds | | | | | | | | 260 | | | |
| Barnet 1,330,000 < > Manchester United |
| QPA | > | Nabil EL ZHAR | WS | MAR | 49 | 93 | 27/08/86 (21) | 88 | 1.75 | 66 | Manchester United | | 1620 | | | | 0 | 0 | 920 | 0 | | |
| Manchester City 5,300,000 < > Manchester United |
| QCK | > | Danny GUTHRIE | CM | ENG | 60 | 94 | 18/04/87 (21) | 93 | 1.70 | 72 | Manchester United | 6.78 | 8340 | | | | 13 | 2 | 3995 | 3 | | |
 Hamburger SV < > 2,960,000 Huddersfield Town |
| AYF | < | Tomás SIVOK | LM/CM | CZE | 59/60 | 12 | 15/09/83 (24) | 78 | 1.85 | 71 | Hamburger SV | | | | | | | | 2880 | | | |
 Internacional < > 2,510,000 Huddersfield Town |
| KGP | < | Fredy MONTERO | WS | COL | 56 | 1 | 26/07/87 (21) | 89 | 1.76 | 70 | Internacional | | | | | | | | 2595 | | | |
 Numancia < > Sheffield Wednesday |
| LBQ | < | Francisco CASILLA | Gk | ESP | 53 | 96 | 02/10/86 (21) | 88 | 1.92 | 83 | Sheffield Wednesday | | 2840 | | | | 0 | 0 | 1080 | 0 | +4 | (t.33, Numancia) |
 Molde < > 2,570,000 Sheffield Wednesday |
| EIC | < | Christoffer ANDERSSON | RM/RWB | SWE | 62 | 8 | 22/10/78 (29) | 89 | 1.73 | 68 | Molde | | | | | | | | 2825 | | | |
| Hibernian < > Northampton Town |
| QWX | < | Ryan O'LEARY | CB | SCO | 50 | 11 | 24/08/87 (20) | 84 | 1.82 | 74 | Hibernian | | | | | | | | 675 | | | |
| Torquay United < > Walsall |
| BNC | < | Kevin McCANN | RB | SCO | 54 | 95 | 11/09/87 (20) | 92 | 1.77 | 70 | Walsall | | 1510 | | | | 1 | 0 | 1240 | 0 | Y | (t.2, Torquay United) |
 FC Brussels < > Walsall |
| QRH | < | Attila FILKOR | AM/St | HUN | 54 | 94 | 12/07/88 (20) | 88 | 1.81 | 76 | Walsall | | 1750 | | | | 0 | 0 | 1830 | 0 | Y | (t.2, FC Brussels) |
 Galatasaray 600,000 < > Birmingham City |
| WUD | > | Majid BOUGHERRA | CB/DM | ALG | 58 | 96 | 07/10/82 (25) | 92 | 1.89 | 89 | Birmingham City | | 6340 | | | | 0 | 0 | 1375 | 0 | +2 | |
| JXD | < | Andy WEBSTER | CB | SCO | 58 | 10 | 23/04/82 (26) | 93 | 1.82 | 63 | Galatasaray | | | 10 | | | | | 1290 | | | |
 Palermo < > Chelsea |
| DEN | < | Davide BRIVIO | LB | ITA | 53/55 | 95 | 17/08/88 (20) | 77 | 1.85 | 82 | Chelsea | | 2300 | | | | 0 | 0 | 1435 | 0 | Y | (t.39, Palermo) |
| CSKA 1,000,000 < > Portsmouth |
| TAS | > | Dmitri RYZHOV | St | RUS | 45 | 90 | 26/08/89 (18) | 89 | 1.87 | 84 | Portsmouth | | 450 | | | | 0 | 0 | 680 | 0 | Y | |
| Besiktas < > Preston North End |
| AFD | < | MEHMET Topuz | RM | TUR | 60 | 95 | 07/09/83 (24) | 91 | 1.83 | 74 | Preston North End | | 9000 | | | | 0 | 0 | 2880 | 0 | +3 | (t.8, Besiktas) |
| Colchester United < > Rochdale |
| LCT | < | Mathieu VALBUENA | CM | FRA | 62 | 98 | 28/09/84 (23) | 90 | 1.63 | 57 | Rochdale | 6.67 | 7850 | | | | 1 | 0 | 4340 | 0 | +3 | (t.14, Colchester United) |
| FEL | < | Änis BEN-HATIRA | AM | GER | 55 | 87 | 18/07/88 (20) | 80 | 1.81 | 76 | Rochdale | | 1190 | | | | 0 | 0 | 2115 | 0 | Y | (t.14, Colchester United) |
| Santos 6,750,000 < > Liverpool |
| OCB | > | FELIPE Garcia | Gk | BRA | 54 | 93 | 10/01/88 (20) | 85 | 1.90 | 79 | Liverpool | | 1900 | | | | 0 | 0 | 1340 | 0 | Y | |
| Flamengo < > 260,000 Liverpool |
| DEH | < | CÁSSIO Ramos | Gk | BRA | 45 | 15 | 06/06/87 (21) | 84 | 1.95 | 92 | Flamengo | | | | | | | | 310 | | | |
| FC Schalke 04 300,000 < > Swansea City |
| FVS | > | Carlos ZAMBRANO | CB | PER | 42 | 85 | 10/07/89 (19) | 92 | | | Swansea City | | 300 | | | | 0 | 0 | 195 | 0 | Y | |
| Helsingborg 300,000 < > Swansea City |
| SMR | > | Joel EKSTRAND | CB | SWE | 42 | 78 | 04/02/89 (19) | 83 | 1.88 | 79 | Swansea City | | 300 | | | | 0 | 0 | 195 | 0 | Y | |
| Halifax Town 5,000,000 < > Yeovil Town |
| EGP | > | Emile HESKEY | CS | ENG | 62 | 98 | 11/01/78 (30) | 95 | 1.90 | 88 | Yeovil Town | 6.69 | 11860 | | | | 4 | 0 | 3055 | 16 | +3 | |
| Barnet 2,100,000 < > Watford |
| UYM | < | Rodolfo ARRUABARRENA | LB | ARG | 63 | 91 | 20/07/75 (33) | 91 | 1.78 | 72 | Barnet | 7.02 | 14040 | | | | 3 | 1 | 1045 | 1 | | |
| IMQ | > | Laurent BONNART | FB/DM | FRA | 63 | 96 | 25/12/79 (28) | 90 | 1.70 | 62 | Watford | 7.05 | 13440 | | | | 3 | 0 | 2385 | 5 | +2 | |
| Brighton & HA 2,750,000 < > Watford |
| LMX | > | Rubén BARAJA | CM | ESP | 65 | 84 | 11/07/75 (33) | 88 | 1.80 | 77 | Watford | 6.62 | 20200 | | | | 3 | 0 | 2095 | 0 | +2 | |
| Swindon Town 5,010,000 < > Southend United |
| MFZ | > | Costas KATSOURANIS | DM/CB | GRE | 65 | 92 | 21/06/79 (29) | 91 | 1.80 | 75 | Southend United | 7.38 | 21600 | | | | 1 | 0 | 2975 | 0 | +3 | |
| Loan callbacks |
| MQE | - | Freddy ADU | WS | USA | 57/58 | 95 | 03/06/89 (19) | 79 | 1.72 | 63 | Tottenham Hotspur | | 3590 | | | | 2 | 0 | 4145 | 0 | Y | |
| QFO | <15 | Magnus TROEST | CB | DEN | 57 | 86 | 05/06/87 (21) | 89 | 1.89 | 84 | Stockport County | 6.54 | 2790 | | | | 1 | 0 | 1755 | 0 | Y | |
| YTI | - | Alan SMITH | CS/CM | ENG | 63 | 95 | 28/10/80 (27) | 94 | 1.78 | 69 | Preston North End | 6.09 | 14940 | | | | 4 | 0 | 4360 | 0 | +3 | |
| PSN | - | Steve NOTMAN | CM/RM | SCO | 44 | 95 | 29/09/86 (21) | 93 | 1.80 | 68 | Birmingham City | | 830 | | | | 0 | 0 | 355 | 0 | +1 | |
| RWL | - | DANIEL da Silva CARVALHO | AM | BRA | 62 | 91 | 01/03/83 (25) | 85 | 1.80 | 80 | Swansea City | | 18180 | | | | 2 | 0 | 3645 | 0 | +3 | |
| QIK | - | Fernando FORESTIERI | WS | ITA | 54 | 94 | 15/01/90 (18) | 91 | 1.72 | 67 | Huddersfield Town | | 1880 | | | | 0 | 0 | 2515 | 0 | Y | |
| TTQ | - | Ludovic BUTELLE | Gk | FRA | 59/60 | 95 | 03/04/83 (25) | 79 | 1.88 | 79 | Port Vale | | 9570 | | | | 2 | 0 | 2145 | 0 | | |
| CML | - | Lewin NYATANGA | CB/LB | WAL | 56 | 94 | 18/06/88 (20) | 94 | 1.87 | 79 | Northampton Town | 6.76 | 2240 | | | | 0 | 0 | 1665 | 0 | Y | |
