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| Transfers |
 Altrincham < > Barnsley |
| HXY | < | Robbie CUNDY | CB | ENG | 47 | 11 | 30/05/97 (26) | 91 | 1.88 | 82 | Altrincham | | | 1 | | | | | 195 | | | |
| PEV | < | Joseph MBONG | St | MLT | 47 | 14 | 15/07/97 (26) | 91 | | | Altrincham | | | | | | | | 390 | | | |
| QVM | < | Aapo HALME | CB | FIN | 48 | 9 | 22/05/98 (26) | 91 | 1.93 | 78 | Altrincham | | | | | | | | 240 | | | |
| MMB | < | Adam RYCZKOWSKI | St | POL | 46 | 14 | 30/04/97 (27) | 82 | 1.78 | 69 | Altrincham | | | | | | | | 295 | | | |
| 4,450,000 < > Barnsley |
| TMI | > | Chris RIGG | CM | ENG | 52 | 86 | 18/06/07 (16) | 90 | | | Barnsley | | 1250 | | | | 0 | 0 | 1880 | 0 | Y | |
| 5,125,000 < > Barnsley |
| NRZ | > | Jack HINSHELWOOD | DM/CM | ENG | 55 | 96 | 11/04/05 (19) | 92 | | | Barnsley | | 3810 | | | | 0 | 0 | 1570 | 0 | +1 | |
 FC Zürich 7,500,000 < > Charlton Athletic |
| QTO | > | Wilfried GNONTO | LW/WS | ITA | 60 | 72 | 05/11/03 (20) | 91 | 1.70 | 72 | Charlton Athletic | | 7410 | | | | 0 | 0 | 4370 | 0 | +1 | |
 Flamengo 500,000 < > Charlton Athletic |
| NEF | > | LORRAN Lucas Pereira de Sousa | St | BRA | 38 | 73 | 04/07/06 (17) | 92 | | | Charlton Athletic | | 160 | | | | 0 | 0 | 255 | 0 | Y | |
| Derby County < > 90,000 Charlton Athletic |
| YCB | < | Adedeji OSHILAJA | LB | ENG | 48 | 93 | 26/02/93 (31) | 95 | 1.81 | 75 | Derby County | 7.15 | 1200 | | | | 2 | 0 | 130 | 1 | +1 | |
 St.Pauli < > 540,000 Ipswich Town |
| ZUA | < | Idris EL MIZOUNI | CM | TUN | 47 | 6 | 26/09/00 (23) | 86 | | | St.Pauli | | | | | | | | 445 | | | |
| Jahn Regensburg 3,500,000 < > Ipswich Town |
| YKK | > | Jonas URBIG | Gk | GER | 53 | 72 | 08/08/03 (20) | 88 | 1.89 | 74 | Ipswich Town | | 1360 | | | | 0 | 0 | 1160 | 0 | Y | |
| Nuneaton Borough < > Ipswich Town |
| QQY | < | Rekeem HARPER | CM/AM | ENG | 46 | 9 | 08/03/00 (24) | 94 | 1.83 | 64 | Nuneaton Borough | | | | | | | | 315 | | | |
| RHL | < | Tom CARROLL | CM/LM | ENG | 47 | 15 | 28/05/92 (31) | 94 | 1.77 | 71 | Nuneaton Borough | | | | | | | | 185 | | | |
| KGW | < | Luke GARBUTT | LWB | ENG | 46 | 13 | 21/05/93 (31) | 94 | 1.78 | 72 | Nuneaton Borough | | | | | | | | 70 | | | |
| Inter < > Plymouth Argyle |
| OHD | < | Leonardo BONUCCI | CB | ITA | 64 | 15 | 01/05/87 (37) | 90 | 1.90 | 81 | Inter | | | | | | | | F/t | | | |
| 240,000 < > Burton Albion |
| YGW | > | Eoin TOAL | CB | NIR | 49 | 85 | 15/02/99 (25) | 92 | 1.91 | 70 | Burton Albion | | 1440 | | | | 0 | 0 | 315 | 0 | +1 | |
| 850,000 < > Burton Albion |
| YGA | > | Andre BROOKS | LW | ENG | 53 | 74 | 20/08/03 (20) | 95 | | | Burton Albion | | 2450 | | | | 0 | 0 | 1580 | 0 | +1 | |
| 1,300,000 < > Burton Albion |
| APQ | > | Andy MORAN | AM | IRL | 55 | 90 | 15/10/03 (20) | 95 | 1.77 | 73 | Burton Albion | | 3710 | | | | 0 | 0 | 2115 | 0 | +1 | |
| 670,000 < > Mansfield Town |
| TFB | > | Dexter LEMBIKISA | LWB | JAM | 54 | 99 | 04/11/03 (20) | 88 | 1.80 | 68 | Mansfield Town | | 2840 | | | | 0 | 0 | 1240 | 0 | +1 | |
| Empoli 4,595,000 < > Wycombe Wanderers |
| CAH | > | Guglielmo VICARIO | Gk | ITA | 65 | 91 | 07/10/96 (27) | 93 | 1.94 | 78 | Wycombe Wanderers | | 20500 | | | | 0 | 0 | 3565 | 0 | +1 | |
| Released |
| SRJ | 16 | Andy KING | CM/LM | WAL | 53 | 6 | 29/10/88 (35) | 96 | 1.82 | 74 | Clyde | | | | | | | | F/t | | | |
