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| Transfers |
 Everton < > 2,250,000 Bristol City |
| LUM | < | Tom FELLOWS | RW | ENG | 58 | 97 | 25/07/03 (21) | 94 | 1.83 | 67 | Everton | | 5980 | | | | 3 | 0 | 2985 | 0 | +2 | |
 Osasuna 9,050,000 < > Hull City |
| ABL | > | Harry GRAY | St | ENG | 37 | 96 | 08/10/08 (16) | 92 | | | Hull City | | 140 | | | | 0 | 0 | 240 | 0 | Y | |
| 1,200,000 < > Stockport County |
| QVP | > | Stefán Teitur ÞÓRÐARSON | CM | ISL | 57 | 93 | 16/10/98 (26) | 92 | 1.89 | 78 | Stockport County | | 4730 | | | | 0 | 0 | 1640 | 0 | +1 | |
| Portsmouth 2,800,000 < > Stockport County |
| RML | > | Mattie POLLOCK | CB | ENG | 56 | 95 | 28/09/01 (23) | 94 | 1.91 | 80 | Stockport County | 6.27 | 3650 | | | | 0 | 0 | 1220 | 0 | +1 | |
| Preston North End < > 540,000 Barnsley |
| YQC | < | Ronnie EDWARDS | CB | ENG | 54 | 92 | 28/03/03 (22) | 94 | | | Preston North End | | 1740 | | | | 0 | 0 | 540 | 0 | | |
 Partizan < > 5,120,000 Barnsley |
| NKG | < | Abdul FATAWU | W | GHA | 61 | 12 | 08/03/04 (21) | 95 | 1.77 | 73 | Partizan | | | | | | | | 4615 | | | |
| Notts County 22,000,000 < > Plymouth Argyle |
| RYC | > | Mattéo GUENDOUZI | CM | FRA | 65 | 94 | 14/04/99 (26) | 86 | 1.80 | 68 | Plymouth Argyle | 6.95 | 22600 | | | | 2 | 0 | 5315 | 0 | +1 | |
| QAZ | > | Brennan JOHNSON | W | WAL | 65 | 87 | 23/05/01 (23) | 92 | 1.79 | 73 | Plymouth Argyle | 6.88 | 22000 | | | | 2 | 0 | 6680 | 1 | +1 | |
| Athletic Bilbao < > 5,910,000 Charlton Athletic |
| GGF | < | Alberto MOLEIRO González | AM/LW | ESP | 62 | 11 | 30/09/03 (21) | 89 | 1.71 | 68 | Athletic Bilbao | | | | | | | | 5325 | | | |
| R.Madrid Castilla 9,500,000 < > Charlton Athletic |
| SSE | > | Nicolás Paz Martínez, NICO PAZ | AM | ARG | 61 | 87 | 08/09/04 (20) | 90 | 1.76 | 64 | Charlton Athletic | | 10920 | | | | 0 | 0 | 5045 | 0 | +1 | |
| FPY | < | MARC GUIU Paz | CS | ESP | 58 | 15 | 04/01/06 (19) | 87 | 1.87 | 82 | R.Madrid Castilla | | | | | | | | 4145 | | | |
| 500,000 < > York City |
| YNK | > | Yago de SANTIAGO Alonso | AM | ESP | 50 | 85 | 15/04/03 (22) | 90 | | | York City | | 1670 | | | | 0 | 0 | 820 | 0 | | |
| 450,000 < > York City |
| NQI | > | Omari FORSON | AM/W | ENG | 49 | 97 | 20/07/04 (20) | 92 | | | York City | | 1370 | | | | 0 | 0 | 870 | 0 | | |
| 355,000 < > York City |
| MIS | > | Caolan BOYD-MUNCE | CM | NIR | 51 | 98 | 26/01/00 (25) | 95 | | | York City | | 1940 | | | | 0 | 0 | 690 | 0 | | |
| 760,000 < > Swindon Town |
| NZT | > | Henry LAWRENCE | RB/CM | ENG | 56 | 97 | 21/09/01 (23) | 92 | | | Swindon Town | | 3670 | | | | 0 | 0 | 1220 | 0 | | |
| 360,000 < > Swindon Town |
| QOE | > | Rob APTER | RW/AM | SCO | 49 | 82 | 16/01/03 (22) | 94 | | | Swindon Town | | 1390 | | | | 0 | 0 | 700 | 0 | | |
 Silkeborg 2,145,000 < > Sunderland |
| JDD | > | Oliver SONNE | RB/CB | PER | 59 | 92 | 10/11/00 (24) | 90 | 1.84 | 72 | Sunderland | | 7360 | | | | 0 | 0 | 1690 | 0 | +1 | |
| Released |
| IWG | 16 | Harry LEWIS | Gk | ENG | 46 | 13 | 20/12/97 (27) | 94 | 1.91 | 77 | Cuneo | | | | | | | | 160 | | | |
| HET | 16 | Juan LARIOS López | LB | ESP | 45 | 8 | 12/01/04 (21) | 84 | | | Unionistas | | | | | | | | 260 | | | |
