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| Transfers |
 Biggleswade Town < > 30,000 Stockport County |
| YJP | < | Ryan RYDEL | LWB/LM | ENG | 41 | 5 | 09/02/01 (24) | 95 | | | Biggleswade Town | | | | | | | | 40 | | | |
| Exeter City < > 90,000 Stockport County |
| YQR | < | Fraser HORSFALL | CB | ENG | 46 | 95 | 12/11/96 (28) | 93 | 1.90 | 82 | Exeter City | | 880 | | | | 0 | 0 | 120 | 0 | +1 | |
| Luton Town 3,000,000 < > Stockport County |
| EWR | > | Jordan BEYER | RB/CB | GER | 58 | 96 | 19/05/00 (24) | 88 | 1.87 | 80 | Stockport County | 7.03 | 5130 | | | | 2 | 0 | 1455 | 0 | +1 | |
 PSV 14,000,000 < > Barnsley |
| PUT | > | Johan BAKAYOKO | RW | BEL | 65 | 97 | 20/04/03 (22) | 92 | 1.79 | 70 | Barnsley | | 22600 | | | | 0 | 0 | 7425 | 0 | +1 | |
 Olympiakos 6,500,000 < > Bristol City |
| KOS | > | Charalambos KOSTOULAS | St | GRE | 58 | 99 | 30/05/07 (17) | 90 | | | Bristol City | | 5430 | | | | 0 | 0 | 4825 | 0 | +3 | |
 Brommapojkarna 6,750,000 < > Bristol City |
| EAB | > | Lucas BERGVALL | CM | SWE | 60 | 81 | 02/02/06 (19) | 91 | | | Bristol City | | 7930 | | | | 0 | 0 | 4750 | 0 | +3 | |
| Cardiff City 2,500,000 < > Hull City |
| YES | > | James BEADLE | Gk | ENG | 56 | 98 | 16/06/04 (20) | 93 | | | Hull City | 6.65 | 4170 | | | | 0 | 0 | 1790 | 0 | +1 | |
| Cambridge United < > 120,000 Hull City |
| YGU | < | Andy CANNON | AM | ENG | 46 | 0 | 14/03/96 (29) | 91 | 1.76 | 74 | Cambridge United | | | | | | | | 195 | | | |
| Hull City < > Ipswich Town |
| XDR | < | Dean HUIJSEN | CB | ESP | 61 | 96 | 14/04/05 (20) | 93 | | | Ipswich Town | | 5090 | | | | 0 | 0 | 3425 | 0 | Y | (t.7, Hull City) |
| XMD | < | Jobe BELLINGHAM | CM/AM | ENG | 59 | 92 | 23/09/05 (19) | 83 | | | Ipswich Town | | 3420 | | | | 2 | 0 | 4115 | 0 | Y | (t.7, Hull City) |
 Rustavi 10,000,000 < > Charlton Athletic |
| OLG | > | Khvicha KVARATSKHELIA | LW/St | GEO | 68 | 92 | 12/02/01 (24) | 91 | 1.83 | 70 | Charlton Athletic | | 40940 | | | | 0 | 0 | 9095 | 0 | +1 | |
| AWB | < | Anthony GORDON | W/WS | ENG | 65 | 0 | 24/02/01 (24) | 95 | 1.73 | 62 | Rustavi | | | | | | | | 5940 | | | |
| IXB | < | Nene DORGELES | AM | MLI | 57 | 10 | 23/12/02 (22) | 90 | 1.74 | 65 | Rustavi | | | | | | | | 2335 | | | |
| QGN | < | Ayyoub BOUADDI | AM/CM | FRA | 58 | 2 | 02/10/07 (17) | 89 | | | Rustavi | | | | | | | | 4140 | | | |
 Mirassol < > 2,380,000 Charlton Athletic |
| NEF | < | LORRAN Lucas Pereira de Sousa | AM/W | BRA | 54 | 15 | 04/07/06 (18) | 80 | | | Mirassol | | | | | | | | 2165 | | | |
| 310,000 < > Sunderland |
| BEW | > | Luke CHAMBERS | LB | ENG | 49 | 85 | 24/06/04 (20) | 91 | | | Sunderland | | 1430 | | | | 0 | 0 | 580 | 0 | | |
| 610,000 < > Sunderland |
| FYD | > | Mark O'MAHONY | CS | IRL | 49 | 94 | 14/01/05 (20) | 96 | | | Sunderland | | 1620 | | | | 0 | 0 | 1020 | 0 | | |
 Linfield 1,595,000 < > Luton Town |
| JNI | > | Paul SMYTH | RW/WS | NIR | 56 | 98 | 10/09/97 (27) | 93 | 1.75 | 67 | Luton Town | | 4280 | | | | 0 | 0 | 1320 | 0 | +1 | |
| 840,000 < > Mansfield Town |
| BAI | > | Florian BIANCHINI | St | FRA | 54 | 82 | 25/06/01 (23) | 90 | | | Mansfield Town | | 3190 | | | | 0 | 0 | 1555 | 0 | +1 | |
| 400,000 < > Swindon Town |
| QUB | > | Nicolas SCHMID | Gk | AUT | 55 | 93 | 22/02/97 (28) | 89 | 1.95 | 82 | Swindon Town | | 3420 | | | | 0 | 0 | 720 | 0 | +1 | |
 Boca Juniors 3,285,000 < > York City |
| UDL | > | Valentín BARCO | LWB | ARG | 59 | 86 | 23/07/04 (20) | 91 | 1.70 | 64 | York City | | 6970 | | | | 0 | 0 | 2570 | 0 | +1 | |
| Loan/transfer listed |
| FWV | - | Marc-André TER STEGEN | Gk | GER | 69 | 92 | 30/04/92 (33) | 80 | 1.89 | 84 | Plymouth Argyle | | 60200 | | | T | 2 | 0 | 4125 | 0 | | |
| PRP | - | Tyreik WRIGHT | LW | IRL | 44 | 91 | 22/09/01 (23) | 86 | 1.79 | 72 | Plymouth Argyle | | 800 | | | T | 0 | 0 | 260 | 0 | | |
| LXY | - | Charlie WEBSTER | CM | ENG | 46 | 94 | 31/01/04 (21) | 88 | | | Plymouth Argyle | | 940 | | | T | 0 | 0 | 490 | 0 | | |
| UDD | - | Shola SHORETIRE | W/AM | ENG | 53 | 93 | 02/02/04 (21) | 88 | | | Plymouth Argyle | | 1300 | | | T | 0 | 0 | 1435 | 0 | | |
| Released |
| RRB | 25+ | NEWERTON Martins da Silva | W | UKR | 46 | 12 | 03/06/05 (19) | 88 | 1.65 | 60 | Shakhtar | | | | | | | | 610 | | | |
