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| Transfers |
 Bristol City 1,040,000 < > Wrexham |
| NAM | > | Louie BARRY | St | ENG | 52 | 98 | 21/06/03 (22) | 85 | | | Wrexham | | 2080 | | | | 0 | 0 | 1295 | 0 | +1 | |
| 35,000 < > Bristol City |
| LAM | > | Zach ABBOTT | CB | ENG | 37 | 97 | 13/05/06 (19) | 92 | | | Bristol City | | 140 | | | | 0 | 0 | 55 | 0 | Y | |
 Valencia 6,050,000 < > Stoke City |
| PLW | > | Cristhian Andrey MOSQUERA Ibargüen | CB/RB | ESP | 63 | 97 | 27/06/04 (21) | 91 | 1.88 | 78 | Stoke City | | 15740 | | | | 0 | 0 | 4165 | 0 | +2 | |
 Independiente 325,000 < > Stoke City |
| GJD | > | Justin Armando LERMA Soliz | AM | ECU | 39 | 97 | 05/05/08 (17) | 87 | 1.76 | 62 | Stoke City | | 190 | | | | 0 | 0 | 245 | 0 | Y | |
 FC Dallas < > Plymouth Argyle |
| VFH | < | ANDREY Nascimento dos SANTOS | CM | BRA | 62 | 91 | 03/05/04 (21) | 89 | 1.76 | 72 | Plymouth Argyle | | 12260 | | | | 0 | 0 | 5325 | 0 | +2 | (t.18, FC Dallas) |
 Al-Shabab < > 1,510,000 Plymouth Argyle |
| JFT | < | ROBERTO FIRMINO Barbosa de Oliveira | CS | BRA | 63 | 1 | 02/10/91 (33) | 81 | 1.81 | 75 | Al-Shabab | | | | | | | | 1800 | | | |
 Sint-Truiden < > Barnsley |
| ELA | < | Roméo LAVIA | DM | BEL | 61 | 94 | 06/01/04 (21) | 89 | 1.81 | 76 | Barnsley | | 10620 | | | | 0 | 0 | 3130 | 0 | | (t.12, Sint-Truiden) |
| Cambridge United < > Leeds United |
| HFC | < | Joe GELHARDT | St | ENG | 54 | 95 | 04/05/02 (23) | 95 | 1.75 | 70 | Leeds United | | 3940 | | | | 2 | 0 | 1555 | 5 | | (t.12, Cambridge United) |
| Leeds United 110,000 < > Millwall |
| MUE | > | Aidan HARRIS | Gk | ENG | 39 | 91 | 16/12/06 (18) | 91 | | | Millwall | | 180 | | | | 0 | 0 | 135 | 0 | Y | |
 Schweinfurt 05 < > 690,000 Stockport County |
| EWR | < | Jordan BEYER | RB/CB | GER | 56 | 4 | 19/05/00 (25) | 92 | 1.87 | 80 | Schweinfurt 05 | | | | | | | | 1010 | | | |
| 1,500,000 < > Birmingham City |
| LGI | > | Aidan MORRIS | CM | USA | 58 | 76 | 16/11/01 (23) | 93 | 1.78 | 72 | Birmingham City | | 5050 | | | | 0 | 0 | 2420 | 0 | +2 | |
| 450,000 < > Hull City |
| TUQ | > | Romelle DONOVAN | RW | ENG | 41 | 95 | 30/11/06 (18) | 89 | | | Hull City | | 260 | | | | 0 | 0 | 310 | 0 | Y | |
| Francs-Borains < > 2,360,000 Hull City |
| XOC | < | Largie RAMAZANI | W | BEL | 59 | 2 | 27/02/01 (24) | 90 | 1.67 | 55 | Francs-Borains | | | | | | | | 2485 | | | |
| 166,000 < > Wrexham |
| DPS | > | Richard TAYLOR | CB | ENG | 48 | 74 | 02/10/00 (24) | 97 | 1.89 | 73 | Wrexham | | 1300 | | | | 0 | 0 | 280 | 0 | | |
| Released |
| YII | 16 | Joe WHITWORTH | Gk | ENG | 41/46 | 14 | 29/02/04 (21) | 70 | 1.79 | 70 | Exeter City | | | | | | | | 365 | | | |
| JDV | 16 | Liam COOPER | CB | SCO | 57 | 2 | 30/08/91 (34) | 85 | 1.82 | 75 | Morton | | | | | | | | 185 | | | |
| YYD | 16 | Harlee DEAN | CB | ENG | 47 | 6 | 26/07/91 (34) | 91 | 1.92 | 83 | Darlington | | | | | | | | F/t | | | |
| MNQ | 16 | Randell WILLIAMS | RWB/RW | ENG | 48 | 1 | 30/12/96 (28) | 94 | 1.73 | 76 | Stenhousemuir | | | | | | | | 195 | | | |
