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| Transfers |
 Crvena Zvezda < > 3,510,000  Crystal Palace |
| VQC | < | Jan-Carlo SIMIC | CB/DM | SRB | 55/60 | 2 | 02/05/05 (20) | 71 | | | Crvena Zvezda | | | | | | | | 2970 | | | |
| Watford < > 280,000 Crystal Palace |
| AEB | < | Hendry BLANK | CB | GER | 45 | 95 | 21/08/04 (20) | 91 | 1.90 | 77 | Watford | | 460 | | | | 0 | 0 | 295 | 0 | Y | |
| Bayern München < > 3,290,000 Port Vale |
| VGQ | < | Tom ROTHE | LB/LM | GER | 56/60 | 2 | 29/10/04 (20) | 73 | 1.93 | 88 | Bayern München | | | | | | | | 2970 | | | |
| West Ham United < > Preston North End |
| FZT | < | Mikey MOORE | LW | ENG | 51/55 | 96 | 11/08/07 (17) | 73 | | | Preston North End | | 780 | | | | 0 | 0 | 2695 | 0 | Y | (t.4, West Ham United) |
| 110,000 < > Accrington Stan. |
| CFG | > | Jack PORTER | Gk | ENG | 37 | 90 | 15/07/08 (16) | 92 | | | Accrington Stan. | | 140 | | | | 0 | 0 | 110 | 0 | Y | |
| 160,000 < > Accrington Stan. |
| IHS | > | Ryan McAIDOO | W | ENG | 36 | 95 | 24/06/08 (16) | 92 | | | Accrington Stan. | | 120 | | | | 0 | 0 | 160 | 0 | Y | |
| Colchester United 1,500,000 < > Accrington Stan. |
| KAD | > | Daniel PAREJO Muñoz | CM/AM | ESP | 65 | 82 | 16/04/89 (36) | 93 | 1.80 | 75 | Accrington Stan. | 7.25 | 21600 | 2 | | | 5 | 0 | F/t | 0 | +2 | |
| Ipswich Town < > Tottenham Hotspur |
| XDR | < | Dean HUIJSEN | CB | ESP | 61 | 92 | 14/04/05 (20) | 93 | | | Tottenham Hotspur | 6.75 | 10720 | | | | 0 | 0 | 3425 | 0 | +2 | (t.16, Ipswich Town) |
| TQL | < | GERARD Martin Langreo | LB | ESP | 54/58 | 70 | 26/02/02 (23) | 73 | 1.86 | 76 | Tottenham Hotspur | | 2120 | 2 | | | 0 | 0 | 1645 | 0 | +2 | (t.16, Ipswich Town) |
 River Plate < > Manchester City |
| DXY | < | Lionel Andrés MESSI | RW/St | ARG | 68 | 94 | 24/06/87 (37) | 91 | 1.69 | 67 | Manchester City | | 44940 | | | | 1 | 0 | F/t | 0 | +1 | (t.41, River Plate) |
| Stevenage < > Sheffield Weds. |
| GST | < | Lewis DOBBIN | WS | ENG | 51 | 96 | 03/01/03 (22) | 92 | | | Sheffield Weds. | | 2250 | | | | 2 | 0 | 1115 | 0 | +3 | (t.10, Stevenage) |
| Fulham 5,000,000 < > Manchester United |
| NRV | > | Ilkay GÜNDOGAN | CM | GER | 69 | 98 | 24/10/90 (34) | 89 | 1.80 | 78 | Manchester United | 7.45 | 52880 | | | | 4 | 0 | 2370 | 4 | +2 | |
 Pafos FC 8,500,000 < > Manchester United |
| KUP | > | Anthony ELANGA | W | SWE | 63 | 97 | 27/04/02 (23) | 94 | 1.78 | 65 | Manchester United | | 16240 | | | | 0 | 0 | 5015 | 0 | +4 | |
 Fortuna Sittard 2,765,000 < > Barrow |
| PMR | > | Zian FLEMMING | CS/AM | NED | 58 | 91 | 01/08/98 (26) | 91 | 1.83 | 84 | Barrow | | 5450 | | | | 0 | 0 | 2215 | 0 | +1 | |
 Lokomotiv Plovdiv 1,040,000 < > Burton Albion |
| HBQ | > | Steven BENDA | Gk | GER | 54 | 80 | 01/10/98 (26) | 91 | 1.92 | 83 | Burton Albion | | 2920 | | | | 0 | 0 | 790 | 0 | +1 | |
| 840,000 < > Wycombe Wanderers |
| BAI | > | Florian BIANCHINI | St | FRA | 54 | 80 | 25/06/01 (23) | 88 | | | Wycombe Wanderers | | 2640 | | | | 0 | 0 | 1555 | 0 | +1 | |
| Loan/transfer listed |
| DUV | - | Ethan WHEATLEY | CS | ENG | 38 | 95 | 20/01/06 (19) | 93 | | | Tottenham Hotspur | | 360 | | | T | 0 | 0 | 195 | 0 | +1 | |
| Released |
| GZS | 16 | Finley McALLISTER | DM | ENG | 37 | 10 | 16/07/06 (18) | 96 | | | Manchester United | | | | | | | | 70 | | | |
| VCF | 16 | Filip MARSCHALL | Gk | ENG | 46 | 10 | 24/04/03 (22) | 85 | 1.95 | 87 | Racing Besançon | | | | | | | | 330 | | | |
| Loan callbacks |
| YJG | - | Joe HUGILL | CS | ENG | 45 | 93 | 19/10/03 (21) | 93 | | | Preston North End | 6.00 | 850 | | | | 0 | 0 | 500 | 0 | +1 | |
| YMX | - | Aaron ANSELMINO | CB | ARG | 45/54 | 91 | 29/04/05 (20) | 63 | | | Sheffield Weds. | | 260 | | | | 0 | 0 | 1240 | 0 | Y | |
| TBN | - | Dariusz STALMACH | AM/CM | POL | 46 | 71 | 08/12/05 (19) | 82 | 1.82 | 75 | Sheffield Weds. | | 530 | 4 | | | 2 | 0 | 610 | 0 | Y | |
