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| Transfers |
 Wycombe Wanderers < > 210,000 Blackpool |
| VCK | < | Matty VIRTUE | CM | ENG | 47 | 96 | 02/05/97 (28) | 93 | | | Wycombe Wanderers | 6.12 | 1040 | | | | 2 | 0 | 270 | 0 | +2 | |
 Ferencváros 3,850,000 < > Blackpool |
| LHM | > | Alex TÓTH | CM | HUN | 56 | 88 | 23/10/05 (20) | 88 | | | Blackpool | | 4510 | | | | 0 | 0 | 2450 | 0 | +3 | |
| Blackburn Rovers < > 200,000 Charlton Athletic |
| ZDF | < | Diallang JAIYESIMI | RW | ENG | 45 | 99 | 07/05/99 (26) | 96 | 1.81 | 72 | Blackburn Rovers | 6.69 | 860 | | | | 3 | 1 | 220 | 2 | +1 | |
 Genoa 3,100,000 < > Charlton Athletic |
| QPQ | > | Seydou FINI | AM/RW | ITA | 55 | 98 | 02/06/06 (19) | 84 | | | Charlton Athletic | | 3530 | | | | 0 | 0 | 2305 | 0 | +3 | |
| Runcorn < > Shrewsbury Town |
| GIP | < | David DAVIS | CM | ENG | 41 | 14 | 20/02/91 (34) | 83 | 1.73 | 78 | Runcorn | | | | | | | | F/t | | | |
 SK Rapid Wien 2,000,000 < > Shrewsbury Town |
| KMK | > | Nikolaus WURMBRAND | CS | AUT | 51 | 89 | 05/01/06 (19) | 85 | 1.72 | 75 | Shrewsbury Town | | 1950 | | | | 0 | 0 | 1500 | 0 | +2 | |
| Spennymoor Town < > 330,000 Rochdale |
| PZV | < | Max WATTERS | WS | ENG | 46 | 13 | 23/03/99 (26) | 84 | 1.80 | 80 | Spennymoor Town | | | | | | | | 325 | | | |
| Cambridge United < > 210,000 Rochdale |
| ZTE | < | Sam NOMBE | CS | ENG | 48 | 90 | 22/10/98 (27) | 91 | 1.74 | 70 | Cambridge United | | 1270 | | | | 1 | 0 | 425 | 0 | +2 | |
 Villarreal < > 2,510,000 Sheffield Weds. |
| CQJ | < | Amine ADLI | W/AM | MAR | 62 | 1 | 10/05/00 (25) | 93 | 1.74 | 60 | Villarreal | | | | | | | | 3645 | | | |
 Go Ahead Eagles < > 2,480,000 Sheffield Weds. |
| UML | < | Cyril NGONGE | RW/AM | BEL | 61 | 12 | 26/05/00 (25) | 90 | 1.77 | 68 | Go Ahead Eagles | | | | | | | | 3150 | | | |
| Bologna < > Preston North End |
| PEF | < | Vasilije ADZIC | AM | MNE | 51 | 95 | 12/05/06 (19) | 82 | 1.85 | 81 | Preston North End | | 2140 | | | | 0 | 0 | 1285 | 0 | +2 | (t.40, Bologna) |
 Caçadores < > 600,000 Hull City |
| YDV | < | HUGO FÉLIX Sequeira | AM | POR | 48 | 15 | 03/03/04 (21) | 82 | 1.77 | 58 | Caçadores | | | | | | | | 675 | | | |
| 300,000 < > Bolton Wanderers |
| BZE | > | Josh KEELEY | Gk | IRL | 49 | 86 | 17/05/03 (22) | 89 | 1.96 | 79 | Bolton Wanderers | | 1560 | | | | 0 | 0 | 540 | 0 | | |
| 355,000 < > Bolton Wanderers |
| KAQ | > | Beni BANINGIME | DM | ENG | 54 | 97 | 09/08/98 (27) | 90 | 1.78 | 66 | Bolton Wanderers | | 3120 | | | | 0 | 0 | 645 | 0 | | |
| 300,000 < > Leeds United |
| LVX | > | Ronan KPAKIO | RB | WAL | 47 | 87 | 25/05/07 (18) | 92 | | | Leeds United | | 590 | | | | 0 | 0 | 515 | 0 | Y | |
| 800,000 < > Leeds United |
| IYS | > | Sam AMO-AMEYAW | LW/AM | ENG | 52 | 84 | 18/07/06 (19) | 93 | | | Leeds United | | 1440 | | | | 0 | 0 | 1490 | 0 | Y | |
| 300,000 < > Oldham Athletic |
| RWS | > | Jake EVANS | RW | ENG | 41 | 96 | 01/01/08 (17) | 96 | | | Oldham Athletic | | 240 | | | | 0 | 0 | 340 | 0 | Y | |
 SV Werder Bremen 3,355,000 < > Bradford City |
| PAR | > | Niclas FÜLLKRUG | CS | GER | 63 | 83 | 09/02/93 (32) | 90 | 1.88 | 78 | Bradford City | | 14640 | | | | 0 | 0 | 2525 | 0 | +1 | |
 Charlotte FC 615,000 < > Doncaster Rovers |
| WFW | > | Ashley FLETCHER | CS | ENG | 50 | 71 | 02/10/95 (30) | 94 | 1.88 | 78 | Doncaster Rovers | | 1530 | | | | 0 | 0 | 460 | 0 | +1 | |
 St.Johnstone 1,950,000 < > Millwall |
| RHH | > | Alistair McCANN | CM | NIR | 56 | 84 | 04/12/99 (25) | 91 | | | Millwall | | 3730 | | | | 0 | 0 | 1500 | 0 | +1 | |
| Alloa Athletic 1,105,000 < > Morecambe |
| OMQ | > | Colby BISHOP | CS | ENG | 54 | 98 | 14/11/94 (31) | 85 | 1.80 | 72 | Morecambe | | 3140 | | | | 0 | 0 | 820 | 0 | +1 | |
| 95,000 < > Northampton Town |
| MTO | > | Simon MOORE | Gk | ENG | 51 | 85 | 19/05/90 (35) | 90 | 1.90 | 77 | Northampton Town | | 1850 | | | | 0 | 0 | 185 | 0 | +1 | |
 Melbourne City 650,000 < > Northampton Town |
| DVS | > | Tom GLOVER | Gk | AUS | 52 | 70 | 24/12/97 (27) | 91 | 1.90 | 90 | Northampton Town | | 2130 | | | | 0 | 0 | 505 | 0 | +1 | |
| Released |
| RXD | 25+ | Ethan ROBSON | CM | ENG | 44 | 2 | 25/07/96 (29) | 88 | 1.78 | 68 | Montrose | | | | | | | | 120 | | | |
| GCM | 16 | Charlie BARKER | RB | ENG | 39 | 4 | 12/02/03 (22) | 86 | | | Welling United | | | | | | | | 45 | | | |
| QOL | 16 | Rekeil PYKE | WS | ENG | 39 | 2 | 01/09/97 (28) | 94 | 1.78 | 65 | Eastleigh | | | | | | | | 35 | | | |
| GSX | 16 | Dusan TADIC | W/AM | SRB | 65 | 13 | 20/11/88 (36) | 80 | 1.78 | 72 | Perugia | | | | | | | | F/t | | | |
