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| Transfers |
 Rangers < > 3,880,000  Morecambe |
| XNU | < | Samuel EDOZIE | W | ENG | 59 | 10 | 28/01/03 (22) | 83 | | | Rangers | | | | | | | | 3130 | | | |
 FC Midtjylland < > 560,000 Morecambe |
| MAU | < | Jeppe KJÆR | RW | DEN | 48 | 0 | 01/03/04 (21) | 83 | 1.74 | 67 | FC Midtjylland | | | | | | | | 675 | | | |
| Tranmere Rovers 3,000,000 < > Stevenage |
| VLF | > | James GARNER | CM | ENG | 62 | 95 | 13/03/01 (24) | 93 | 1.86 | 77 | Stevenage | 6.50 | 12260 | | | | 3 | 0 | 3855 | 0 | +4 | |
| DBK | < | Dan NEIL | DM/CM | ENG | 60 | 90 | 30/11/01 (23) | 92 | 1.78 | 65 | Tranmere Rovers | 6.14 | 9340 | | | | 0 | 0 | 2210 | 0 | | |
 IFK Norrköping 1,100,000 < > FC Halifax Town |
| IZZ | > | Axel BRÖNNER | CM | SWE | 46 | 87 | 04/04/08 (17) | 88 | | | FC Halifax Town | | 510 | | | | 0 | 0 | 730 | 0 | Y | |
| FC Nordsjælland 525,000 < > FC Halifax Town |
| URJ | > | Noah MARKMANN | CB | DEN | 45 | 76 | 24/02/07 (18) | 92 | | | FC Halifax Town | | 480 | | | | 0 | 0 | 370 | 0 | Y | |
 SV Ried < > 700,000 Blackburn Rovers |
| YUS | < | Kwame POKU | W/AM | GHA | 51 | 0 | 11/08/01 (24) | 93 | 1.75 | 64 | SV Ried | | | | | | | | 735 | | | |
 Le Havre 3,425,000 < > Everton |
| UHI | > | Arouna SANGANTE | CB | SEN | 60 | 97 | 12/04/02 (23) | 89 | 1.89 | 76 | Everton | | 8790 | | | | 0 | 0 | 2210 | 0 | +2 | |
| Nice 4,140,000 < > Everton |
| TRD | > | Antoine MENDY | CB | SEN | 60 | 82 | 27/05/04 (21) | 86 | 1.87 | 75 | Everton | | 7970 | | | | 0 | 0 | 2715 | 0 | +2 | |
 Sacramento Rep. < > Everton |
| KFT | < | Matt RITCHIE | LWB/W | SCO | 56 | 2 | 10/09/89 (36) | 94 | 1.72 | 69 | Sacramento Rep. | | | | | | | | F/t | | | |
| ABP | < | Mario GÖTZE | AM/CM | GER | 65 | 4 | 03/06/92 (33) | 91 | 1.76 | 64 | Sacramento Rep. | | | | | | | | 2095 | | | |
| VKE | < | Chris WOOD | CS | NZL | 65 | 8 | 07/12/91 (33) | 94 | 1.90 | 80 | Sacramento Rep. | | | | | | | | 2435 | | | |
| NAP | < | IGOR Julio dos Santos de Paulo | CB | BRA | 63 | 15 | 07/02/98 (27) | 94 | 1.84 | 84 | Sacramento Rep. | | | | | | | | 2545 | | | |
| OYR | < | Aleksandr MAKSIMENKO | Gk | RUS | 62 | 0 | 19/03/98 (27) | 90 | 1.87 | 80 | Sacramento Rep. | | | | | | | | 2330 | | | |
| JIA | < | Ionut 'Andrei' RADU | Gk | ROU | 60 | 11 | 28/05/97 (28) | 90 | 1.86 | 70 | Sacramento Rep. | | | | | | | | 1545 | | | |
| Coventry City < > Cambridge United |
| HYH | < | Vanja MILINKOVIC-SAVIC | Gk | SRB | 62/65 | 98 | 20/02/97 (28) | 75 | 2.02 | 96 | Cambridge United | | 22700 | | | | 0 | 0 | 3175 | 0 | +1 | (t.30, Coventry City) |
| Lyon 1,300,000 < > Notts County |
| IOO | > | Khalis MERAH | DM | FRA | 42 | 86 | 24/02/07 (18) | 92 | | | Notts County | | 280 | | | | 0 | 0 | 220 | 0 | Y | |
| Bor. Dortmund II 1,360,000 < > Preston North End |
| DZL | > | Cole CAMPBELL | AM/W | USA | 48 | 80 | 20/02/06 (19) | 95 | 1.70 | 68 | Preston North End | | 690 | | | | 0 | 0 | 825 | 0 | Y | |
 OFI 1,385,000 < > Huddersfield Town |
| BJL | > | Jairo RIEDEWALD | CB/DM | NED | 58 | 89 | 09/09/96 (29) | 93 | 1.86 | 77 | Huddersfield Town | | 5270 | | | | 0 | 0 | 1050 | 0 | +1 | |
| Loan/transfer listed |
| HSX | - | Nicoló ZANIOLO | RW/St | ITA | 63 | 94 | 02/07/99 (26) | 88 | 1.90 | 79 | Crystal Palace | 6.40 | 13740 | | | T | 0 | 0 | 3980 | 0 | +1 | |
| NUK | - | Tosin ADARABIOYO | CB/RB | ENG | 63 | 95 | 24/09/97 (28) | 94 | 1.96 | 80 | Crystal Palace | | 14340 | | | T | 2 | 0 | 2385 | 0 | +3 | |
| LCC | - | Mykhailo MUDRYK | LW | UKR | 63 | 94 | 05/01/01 (24) | 94 | 1.75 | 61 | Crystal Palace | 6.54 | 16780 | | | T | 8 | 0 | 4455 | 2 | +2 | |
| SXY | - | Finn AZAZ | AM | IRL | 58 | 93 | 07/09/00 (25) | 97 | 1.85 | 70 | Leicester City | 6.60 | 4540 | | | T | 3 | 0 | 2025 | 0 | +1 | |
| OTF | - | Kasey McATEER | W | IRL | 58 | 92 | 22/11/01 (23) | 93 | 1.77 | 69 | Leicester City | 6.60 | 6760 | | | T | 3 | 0 | 2420 | 2 | +1 | |
| DUH | - | Sofiane DIOP | AM | MAR | 61/62 | 95 | 09/06/00 (25) | 78 | 1.65 | 50 | Hull City | | 13760 | | | T | 0 | 0 | 3645 | 0 | +1 | |
| QHU | - | Angel GOMES | CM | ENG | 63 | 95 | 31/08/00 (25) | 94 | 1.70 | 61 | Hull City | | 16980 | | | T | 1 | 0 | 4215 | 0 | +2 | |
| RNI | - | Amine GOUIRI | St | ALG | 64 | 86 | 16/02/00 (25) | 90 | 1.80 | 72 | Hull City | 6.50 | 19880 | | | T | 2 | 0 | 5680 | 0 | +1 | |
| IDW | - | Jonathan Nanitamo IKONÉ | AM/W | FRA | 62 | 93 | 02/05/98 (27) | 92 | 1.75 | 67 | Hull City | 6.50 | 18880 | | | T | 1 | 0 | 3235 | 0 | +1 | |
| TVB | - | Oliver DOVIN | Gk | SWE | 56 | 94 | 11/07/02 (23) | 88 | | | FC Halifax Town | | 4320 | | | T | 0 | 0 | 1430 | 0 | +3 | |
| DRW | - | Filip SIDKLEV | Gk | SWE | 52 | 93 | 12/03/05 (20) | 87 | | | FC Halifax Town | | 1050 | | | T | 1 | 0 | 1000 | 0 | Y | |
| Released |
| KQB | 16 | Alex MURPHY | CB/LB | IRL | 46 | 12 | 25/06/04 (21) | 89 | | | Crawley Town | | | | | | | | 310 | | | |
| UFV | 16 | Tomas GALVEZ | LB | FIN | 48 | 12 | 28/01/05 (20) | 83 | | | Cambuur | | | | | | | | 490 | | | |
| DTB | 16 | GONÇALO Miguel Azevedo RIBEIRO | Gk | POR | 41 | 10 | 15/01/06 (19) | 85 | 1.87 | 62 | Weymouth | | | | | | | | 180 | | | |
