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| Transfers |
 Hansa Rostock < > 990,000  Leeds United |
| EHZ | < | Luka REISCHL | St | AUT | 48 | 13 | 10/01/04 (19) | 83 | | | Hansa Rostock | | | | | | | | 965 | | | |
| Liverpool < > Arsenal |
| DXZ | > | Jordan HENDERSON | CM | ENG | 68 | 32 | 17/06/90 (33) | 94 | 1.82 | 67 | Liverpool | | 44240 | 25 | | | 0 | 0 | 3265 | 0 | | (t.42, Arsenal) |
| 140,000 < > Exeter City |
| NXT | > | Luke MBETE | CB | ENG | 44 | 99 | 18/09/03 (19) | 90 | | | Exeter City | | 380 | | | | 0 | 0 | 280 | 0 | Y | |
| 80,000 < > Exeter City |
| TFB | > | Dexter LEMBIKISA | LWB | JAM | 41 | 85 | 04/11/03 (19) | 93 | | | Exeter City | | 260 | | | | 0 | 0 | 160 | 0 | Y | |
| 187,000 < > Colchester United |
| ANR | > | Sonny FINCH | WS | ENG | 39 | 96 | 05/08/04 (18) | 91 | | | Colchester United | | 350 | | | | 0 | 0 | 270 | 0 | | |
| 99,000 < > Cambridge United |
| UBI | > | Jimmy-Jay MORGAN | St | ENG | 36 | 91 | 21/01/06 (17) | 93 | | | Cambridge United | | 240 | | | | 0 | 0 | 180 | 0 | | |
| 380,000 < > Bristol Rovers |
| NUR | > | Lamare BOGARDE | CM | NED | 46 | 75 | 05/01/04 (19) | 89 | | | Bristol Rovers | | 910 | | | | 0 | 0 | 610 | 0 | | |
 Athlético-PR 2,285,000 < > Everton |
| JXP | > | Norberto Murara, NETO | Gk | BRA | 63 | 96 | 19/07/89 (33) | 89 | 1.91 | 83 | Everton | | 13140 | | | | 0 | 0 | 1760 | 0 | +1 | |
 Monaco B 1,525,000 < > Stockport County |
| DPX | > | Jonathan PANZO | CB | ENG | 55 | 96 | 25/10/00 (22) | 91 | 1.85 | 72 | Stockport County | | 3650 | | | | 0 | 0 | 1175 | 0 | +1 | |
| Released |
| ENP | 16 | Louie SIBLEY | LM/CM | ENG | 50 | 14 | 13/09/01 (21) | 85 | 1.80 | 74 | DSV Leoben | | | | | | | | 915 | | | |
| CGY | 16 | Dennis CIRKIN | LB | ENG | 54 | 0 | 06/04/02 (21) | 90 | | | Motherwell | | | | | | | | 1125 | | | |
| WJB | 16 | Rory McARDLE | CB | NIR | 43 | 3 | 01/05/87 (36) | 92 | 1.85 | 74 | Barnet | | | | | | | | F/t | | | |
| ZMW | 16 | Sam ASHTON | Gk | ENG | 39 | 9 | 09/10/86 (36) | 90 | | | Gualdo | | | | | | | | F/t | | | |
| TYI | 25+ | Wilfredo Daniel CABALLERO | Gk | ARG | 56 | 13 | 28/09/81 (41) | 93 | 1.86 | 80 | Figline Valdarno | | | | | | | | F/t | | | |
