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| Transfers |
 Gainsborough Tr. < > 90,000 Birmingham City |
| SNO | < | Keyendrah SIMMONDS | CS/LW | ENG | 42 | 2 | 31/05/01 (24) | 86 | | | Gainsborough Tr. | | | | | | | | 180 | | | |
 Grêmio 18,100,000 < > Sheffield Weds. |
| RSW | > | Julián ÁLVAREZ | St | ARG | 70 | 87 | 31/01/00 (25) | 88 | 1.70 | 72 | Sheffield Weds. | | 61700 | | | | 0 | 0 | 13360 | 1 | +4 | |
 Aris < > 400,000 Sheffield Weds. |
| GLW | < | Sam BYRAM | RWB | ENG | 56 | 15 | 16/09/93 (32) | 94 | 1.83 | 72 | Aris | | | | | | | | 475 | | | |
 SV Ried < > 1,180,000 Sheffield Weds. |
| UPN | < | Thierno BALLO | CS/AM | AUT | 54 | 2 | 02/01/02 (24) | 92 | 1.72 | 67 | SV Ried | | | | | | | | 1365 | | | |
 Barcelona 750,000 < > Doncaster Rovers |
| PFZ | > | Diego KOCHEN | Gk | USA | 47 | 96 | 19/03/06 (19) | 94 | 1.88 | 80 | Doncaster Rovers | | 560 | | | | 0 | 0 | 505 | 0 | Y | |
 Kalmar FF 6,000,000 < > Doncaster Rovers |
| KRK | > | Roony BARDGHJI | RW/AM | SWE | 60 | 82 | 15/11/05 (20) | 80 | | | Doncaster Rovers | | 7080 | | | | 0 | 0 | 4370 | 0 | +3 | |
 Olympiakos 5,400,000 < > Rushden&Diamonds |
| DKY | > | Christos MOUZAKITIS | CM | GRE | 58 | 92 | 25/12/06 (19) | 80 | | | Rushden&Diamonds | | 5660 | | | | 0 | 0 | 3560 | 0 | +3 | |
| Portsmouth 3,600,000 < > Rushden&Diamonds |
| WKG | > | Kosta NEDELJKOVIC | RB | SRB | 58 | 97 | 16/12/05 (20) | 90 | 1.84 | 72 | Rushden&Diamonds | 7.32 | 4870 | | | | 0 | 1 | 2225 | 3 | +3 | |
| Halmstad 3,515,000 < > Burnley |
| VLH | > | Gabriel GUDMUNDSSON | LWB/LW | SWE | 63 | 90 | 29/04/99 (26) | 92 | 1.81 | 74 | Burnley | | 14440 | | | | 0 | 0 | 2705 | 0 | +1 | |
 Nice 6,335,000 < > Gillingham |
| BYS | > | Dan NDOYE | W | SUI | 64 | 73 | 25/10/00 (25) | 87 | 1.81 | 74 | Gillingham | | 17280 | | | | 0 | 0 | 4875 | 3 | +1 | |
| Released |
| BDW | 16 | Dan FITCHETT | CS | ENG | 37 | 12 | 28/03/91 (34) | 86 | 1.83 | 80 | Aylesbury United | | | | | | | | F/t | | | |
| Loan callbacks |
| OGX | <15 | Karim KONATÉ | St | CIV | 60/61 | 94 | 21/03/04 (21) | 79 | 1.78 | 68 | Sunderland | | 11120 | | | | 0 | 0 | 5375 | 0 | | |
