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| Transfers |
 Blackpool < > 790,000 Doncaster Rovers |
| WFT | < | Chris WILLOCK | W | ENG | 52 | 90 | 31/01/98 (28) | 92 | 1.80 | 67 | Blackpool | | 2110 | | | | 0 | 0 | 650 | 0 | +3 | |
 Real Madrid 4,850,000 < > Doncaster Rovers |
| CZJ | > | JACOBO Ramón Naveros | CB | ESP | 62 | 95 | 06/01/05 (21) | 87 | 1.95 | 80 | Doncaster Rovers | | 11060 | | | | 0 | 0 | 3610 | 0 | +4 | |
 Jong Genk 8,250,000 < > Doncaster Rovers |
| PEE | > | Mika GODTS | LW/WS | BEL | 63 | 92 | 07/06/05 (21) | 90 | 1.76 | 72 | Doncaster Rovers | | 13340 | | | | 0 | 0 | 6145 | 0 | +4 | |
 Celtic 250,000 < > Walsall |
| EKD | > | Callum OSMAND | St/AM | WAL | 54 | 82 | 08/11/05 (20) | 92 | 1.79 | 70 | Walsall | | 170 | | | | 0 | 0 | 165 | 0 | Y | |
| Celtic 2,250,000 < > Rochdale |
| OBG | > | Rocco VATA | AM | IRL | 54 | 97 | 18/04/05 (21) | 91 | | | Rochdale | | 2910 | | | | 0 | 0 | 1660 | 0 | +4 | |
| 1,250,000 < > Rochdale |
| AQA | > | Joel COTTERILL | CM | WAL | 50 | 67 | 10/10/04 (21) | 94 | 1.83 | 70 | Rochdale | | 1750 | | | | 0 | 0 | 915 | 0 | +4 | |
| 1,250,000 < > Coventry City |
| UYZ | > | Jacob CHAPMAN | Gk | AUS | 42 | 97 | 22/10/00 (25) | 93 | 1.85 | 80 | Coventry City | | 530 | | | | 0 | 0 | 90 | 0 | +4 | |
| 300,000 < > Coventry City |
| ILD | > | Jamie KNIGHT-LEBEL | CB | CAN | 48 | 74 | 24/12/04 (21) | 92 | | | Coventry City | | 660 | | | | 0 | 0 | 215 | 0 | +4 | |
| 305,000 < > MK Dons |
| MST | > | Ryan KAVUMA-McQUEEN | W/AM | ENG | 37 | 92 | 01/01/09 (17) | 96 | | | MK Dons | | 140 | | | | 0 | 0 | 170 | 0 | Y | |
| Wrexham 3,005,000 < > MK Dons |
| UIE | > | David OZOH | CM | ENG | 54 | 94 | 01/06/05 (21) | 93 | | | MK Dons | 6.98 | 2910 | | | | 5 | 0 | 1660 | 3 | +2 | |
| 755,000 < > MK Dons |
| BUV | > | Harry HOWELL | AM | ENG | 48 | 86 | 29/09/08 (17) | 94 | | | MK Dons | | 650 | | | | 0 | 0 | 980 | 0 | Y | |
| 505,000 < > Colchester United |
| YLV | > | Leo CASTLEDINE | CM | ENG | 49 | 81 | 20/08/05 (21) | 92 | | | Colchester United | | 1460 | | | | 0 | 0 | 785 | 0 | +2 | |
| Lincoln City 5,015,000 < > Colchester United |
| GQM | > | Romain ESSE | RW | ENG | 58 | 97 | 13/05/05 (21) | 92 | 1.78 | 65 | Colchester United | 6.96 | 5080 | | | | 5 | 1 | 2985 | 5 | +2 | |
| 305,000 < > Colchester United |
| XJO | > | Lewis ORFORD | CM/AM | ENG | 39 | 76 | 18/02/06 (20) | 94 | 1.82 | 70 | Colchester United | | 170 | | | | 0 | 0 | 165 | 0 | Y | |
| Barcelona 2,000,000 < > Rushden&Diamonds |
| ONX | > | XAVI ESPART Font | WB | ESP | 58 | 97 | 21/05/07 (19) | 90 | | | Rushden&Diamonds | | 590 | | | | 0 | 0 | 710 | 0 | Y | |
| SZE | > | Shane KLUIVERT | St | NED | 45 | 95 | 24/09/07 (18) | 89 | | | Rushden&Diamonds | | 460 | | | | 0 | 0 | 680 | 0 | Y | |
| Blackburn Rovers 10,500,000 < > Rushden&Diamonds |
| HSG | > | Adam WHARTON | CM/DM | ENG | 65 | 94 | 06/02/04 (22) | 92 | 1.82 | 76 | Rushden&Diamonds | 7.39 | 21700 | | | | 6 | 0 | 7425 | 5 | +4 | |
 Marseille B 3,055,000 < > Bolton Wanderers |
| FJE | > | Keyliane ABDALLAH | W/AM | FRA | 40 | 95 | 05/04/06 (20) | 92 | 1.85 | 71 | Bolton Wanderers | | 140 | | | | 0 | 0 | 105 | 0 | Y | |
 FC Nordsjælland 3,055,000 < > Bolton Wanderers |
| XIR | > | Stephen ACQUAH | CB | GHA | 42 | 88 | 01/05/06 (20) | 94 | | | Bolton Wanderers | | 270 | | | | 0 | 0 | 165 | 0 | Y | |
| YRD | > | Peter 'Villum' BERTHELSEN | CM/LW | DEN | 43 | 78 | 14/04/06 (20) | 88 | | | Bolton Wanderers | | 310 | | | | 0 | 0 | 340 | 0 | Y | |
| FQO | > | Prince AMOAKO | LW | GHA | 42 | 78 | 19/02/07 (19) | 92 | | | Bolton Wanderers | | 260 | | | | 0 | 0 | 325 | 0 | Y | |
 Bodø/Glimt 1,015,000 < > Bolton Wanderers |
| QRF | > | Sondre AUKLEND | LW/AM | NOR | 42 | 78 | 10/06/03 (23) | 93 | | | Bolton Wanderers | | 510 | | | | 0 | 0 | 175 | 0 | +2 | |
| Wycombe Wanderers < > Birmingham City |
| TOD | < | Scott HOGAN | St | IRL | 45 | 95 | 13/04/92 (34) | 93 | 1.80 | 64 | Wycombe Wanderers | 6.33 | 840 | | | | 3 | 0 | F/t | 0 | +1 | |
| 135,000 < > Birmingham City |
| VHP | > | Amin NABIZADA | W | AFG | 41 | 81 | 21/06/07 (19) | 92 | | | Birmingham City | | 220 | | | | 0 | 0 | 275 | 0 | Y | |
| 1,500,000 < > Birmingham City |
| UNX | > | Trey NYONI | CM | ENG | 56 | 93 | 30/06/07 (19) | 93 | 1.80 | 75 | Birmingham City | | 4120 | | | | 0 | 0 | 2665 | 0 | +4 | |
 SC Paderborn 07 2,980,000 < > Bristol City |
| TYI | > | Filip BILBIJA | LW | GER | 59 | 88 | 24/04/00 (26) | 91 | 1.89 | 78 | Bristol City | | 7310 | | | | 0 | 0 | 2210 | 0 | +1 | |
| Fort. Düsseldorf 1,880,000 < > Bristol Rovers |
| NVJ | > | Kwadwo BAAH | St | GER | 54 | 95 | 27/01/03 (23) | 92 | 1.83 | 75 | Bristol Rovers | | 2640 | | | | 0 | 0 | 1555 | 0 | +1 | |
| 1,115,000 < > Aldershot Town |
| QDW | > | Melker ELLBORG | Gk | SWE | 58 | 97 | 22/05/03 (23) | 91 | 1.91 | 84 | Aldershot Town | | 4760 | | | | 0 | 0 | 1915 | 0 | +1 | |
 Urawa Reds 5,360,000 < > Watford |
| GNV | > | Zion SUZUKI | Gk | JPN | 64 | 86 | 21/08/02 (24) | 94 | 1.88 | 90 | Watford | | 15980 | | | | 0 | 0 | 4125 | 0 | +1 | |
 Famalicão 3,930,000 < > Yeovil Town |
| AMY | > | PABLO Felipe Pereira de Jesus | CS | POR | 58 | 79 | 02/01/04 (22) | 94 | 1.84 | 76 | Yeovil Town | | 5480 | | | | 0 | 0 | 3145 | 0 | +1 | |
| Released |
| KDW | 16 | GABRIEL Silva MOSCARDO de Salles | DM | BRA | 58/60 | 13 | 28/09/05 (20) | 76 | | | Espanyol | | | | | | | | 2970 | | | |
| ABA | 25+ | Jimmy KEOHANE | CM | IRL | 40 | 14 | 22/01/91 (35) | 88 | 1.80 | 72 | Hayes & Yeading | | | | | | | | F/t | | | |
| YNA | 16 | Liam O'BRIEN | Gk | ENG | 37 | 14 | 03/11/91 (34) | 86 | 1.85 | 78 | Stratford Town | | | | | | | | F/t | | | |
