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| Transfers |
 Hertha BSC Berlin 10,250,000 < >  Exeter City |
| ILE | > | Marton DÁRDAI | CB | GER | 54 | 86 | 12/02/02 (19) | 88 | | | Exeter City | | 1880 | | | | 0 | 0 | 1355 | 0 | Y | |
 Finn Harps < > 3,770,000 AFC Wimbledon |
| XJG | < | Karlan AHEARNE-GRANT | CS | ENG | 58 | 2 | 18/09/97 (23) | 92 | 1.83 | 70 | Finn Harps | | | | | | | | 2815 | | | |
| Waterford < > 150,000 AFC Wimbledon |
| HEQ | < | Jay STANSFIELD | CS | ENG | 38 | 10 | 24/11/02 (18) | 85 | | | Waterford | | | | | | | | 225 | | | |
 Lazio < > 1,440,000 FC Halifax |
| EBJ | < | Mathias ROSS Jensen | CB | DEN | 55 | 2 | 15/01/01 (20) | 91 | 1.90 | 80 | Lazio | | | | | | | | 1435 | | | |
| Hertha BSC Berlin 1,900,000 < > Wrexham |
| HIM | > | Lazar SAMARDZIC | AM | GER | 51 | 98 | 24/02/02 (19) | 89 | | | Wrexham | | 1240 | | | | 0 | 0 | 1285 | 0 | Y | |
| Plymouth Argyle < > Wrexham |
| WIK | < | Bryan GIL Salvatierra | W | ESP | 61 | 85 | 11/02/01 (20) | 94 | 1.75 | 60 | Wrexham | 6.62 | 6690 | 2 | | | 6 | 0 | 5045 | 5 | +5 | (t.14, Plymouth Argyle) |
 Celtic 250,000 < > Northampton Town |
| NTG | > | Joey DAWSON | CM | ENG | 38 | 90 | 30/05/03 (18) | 93 | | | Northampton Town | | 160 | | | | 0 | 0 | 180 | 0 | Y | |
| Wycombe Wanderers 9,000,000 < > Northampton Town |
| CPW | > | John LUNDSTRAM | CM | ENG | 62 | 88 | 18/02/94 (27) | 95 | 1.81 | 74 | Northampton Town | 7.46 | 11460 | | | | 7 | 0 | 3235 | 1 | +4 | |
| Swansea City 7,500,000 < > Preston North End |
| GLR | > | Andrea PINAMONTI | St | ITA | 60 | 32 | 19/05/99 (22) | 84 | | | Preston North End | | 8990 | 1 | | | 3 | 0 | 4215 | 0 | +3 | |
| NHT | > | VINÍCIUS José Paixão de Oliveira JÚNIOR | W | BRA | 64 | 53 | 12/07/00 (21) | 88 | 1.77 | 67 | Swansea City | | 15240 | 5 | | | 1 | 0 | 7090 | 3 | +3 | (t.18, Preston North End) |
| Bolton Wanderers 35,000,000 < > Preston North End |
| NNM | > | Nathaniel PHILLIPS | CB | ENG | 61 | 84 | 21/03/97 (24) | 94 | | | Preston North End | 7.18 | 10020 | | | | 0 | 0 | 2265 | 1 | +3 | |
 Racing Genk 585,000 < > Peterborough Utd |
| MPM | > | Winston REID | CB | NZL | 58 | 96 | 03/07/88 (33) | 93 | 1.90 | 87 | Peterborough Utd | | 5850 | | | | 0 | 0 | 450 | 0 | +1 | |
| 555,000 < > Peterborough Utd |
| FIJ | > | Yoann BARBET | CB | FRA | 57 | 85 | 10/05/93 (28) | 89 | 1.87 | 77 | Peterborough Utd | | 5110 | | | | 0 | 0 | 965 | 0 | +1 | |
 Feirense 2,490,000 < > Wigan Athletic |
| SNC | > | Oghenekaro 'Peter' ETEBO | CM | NGA | 58 | 80 | 09/11/95 (25) | 82 | 1.76 | 70 | Wigan Athletic | | 5750 | | | | 0 | 0 | 2025 | 0 | +1 | |
| Released |
| XSH | 16 | Kelle ROOS | Gk | NED | 52 | 9 | 31/05/92 (29) | 92 | 1.93 | 90 | Almere City | | | | | | | | 405 | | | |
| TWG | 16 | Salvatore BOCCHETTI | CB/LB | ITA | 54/55 | 10 | 30/11/86 (34) | 78 | 1.78 | 70 | (retired) | | | | | | | | 105 | | | |
| Loan callbacks |
| FFX | - | Konrad DE LA FUENTE | RW | USA | 52 | 92 | 16/07/01 (20) | 92 | 1.70 | 60 | Tottenham Hotspur | | 600 | | | | 0 | 0 | 1365 | 0 | Y | |
| HXS | - | Adam IDAH | CS | IRL | 56 | 98 | 11/03/01 (20) | 88 | 1.90 | 83 | Tranmere Rovers | 6.08 | 1780 | | | | 1 | 0 | 2850 | 0 | Y | |
| IBZ | - | Nathan FERGUSON | CB/FB | ENG | 55 | 99 | 06/10/00 (20) | 93 | 1.78 | 76 | AFC Wimbledon | 6.74 | 2800 | | | | 8 | 0 | 1435 | 1 | +2 | |
| XMK | - | Ricky-Jade JONES | St | ENG | 45 | 94 | 08/11/02 (18) | 86 | 1.82 | 70 | Bury | | 350 | | | | 0 | 0 | 680 | 0 | Y | |
| NEO | - | Paulos ABRAHAM | St | SWE | 54 | 91 | 16/07/02 (19) | 88 | | | FC Halifax | 6.28 | 1860 | | | | 17 | 0 | 2320 | 4 | Y | |
| WPT | - | Armin GIGOVIC | DM | SWE | 54 | 98 | 06/04/02 (19) | 87 | | | FC Halifax | 6.90 | 1860 | | 2 | | 10 | 0 | 1355 | 1 | Y | |
| VLF | - | James GARNER | CM | ENG | 55 | 94 | 13/03/01 (20) | 86 | | | Tranmere Rovers | | 1500 | | | | 0 | 0 | 2115 | 0 | Y | |
