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| Transfers |
 Hajduk Split 9,100,000 < >  Norwich City |
| YGM | > | Luka VUSKOVIC | CB | CRO | 50 | 96 | 24/02/07 (16) | 92 | | | Norwich City | | 1760 | | | | 0 | 0 | 950 | 0 | +2 | |
| Morecambe 19,000,000 < > Notts County |
| GPR | > | Arthur THEATE | CB/LB | BEL | 64 | 99 | 25/05/00 (23) | 91 | 1.92 | 80 | Notts County | 7.19 | 17380 | | | | 6 | 0 | 3925 | 3 | +4 | |
| Oldham Athletic 12,300,000 < > Notts County |
| AKZ | > | Arnaud KALIMUENDO Muinga | CS | FRA | 62 | 38 | 20/01/02 (21) | 83 | 1.78 | 63 | Notts County | | 13560 | 1 | | | 0 | 0 | 6215 | 0 | +4 | |
 Barcelona < > 4,760,000 FC Halifax |
| GJM | < | Kasper DOLBERG | CS | DEN | 63 | 15 | 06/10/97 (25) | 88 | 1.87 | 77 | Barcelona | | | | | | | | 4915 | | | |
| Antwerp 625,000 < > Bradford City |
| JKG | > | Anthony Lenin VALENCIA Bajaña | RW | ECU | 44 | 90 | 21/07/03 (19) | 89 | 1.74 | 64 | Bradford City | | 300 | | | | 0 | 0 | 450 | 0 | Y | |
 Aberdeen 250,000 < > Bradford City |
| TVC | > | Alfie BAVIDGE | CS | SCO | 36 | 88 | 11/04/06 (17) | 94 | | | Bradford City | | 120 | | | | 0 | 0 | 180 | 0 | Y | |
 PSV < > 1,230,000 Forest Green |
| BAC | < | Vicente BESUIJEN | RW/CS | NED | 54 | 14 | 10/04/01 (22) | 85 | 1.69 | 62 | PSV | | | | | | | | 1500 | | | |
| Dundee United 850,000 < > Forest Green |
| ARP | > | Kai FOTHERINGHAM | WS | SCO | 46 | 94 | 18/04/03 (20) | 93 | 1.69 | 54 | Forest Green | | 540 | | | | 0 | 0 | 650 | 0 | Y | |
 Bragantino 385,000 < > Liverpool |
| QZW | > | BRUNO GONÇALVES de Jesus | W/St | BRA | 42 | 95 | 14/03/03 (20) | 84 | | | Liverpool | | 320 | | | | 0 | 0 | 285 | 0 | Y | |
| Bristol Rovers < > 9,500,000 Liverpool |
| OJY | < | Wissam BEN YEDDER | CS | FRA | 66 | 92 | 12/08/90 (32) | 83 | 1.70 | 68 | Bristol Rovers | | 25520 | | | | 1 | 0 | 3940 | 0 | +2 | |
| Willem II < > 1,460,000 Blackpool |
| DII | < | Emanuel EMEGHA | CS | NED | 51 | 2 | 03/02/03 (20) | 88 | 1.76 | 63 | Willem II | | | | | | | | 1370 | | | |
| Salisbury 18,000,000 < > QPR |
| XHF | > | Matías Nicolás VIÑA Susperreguy | LWB | URU | 63 | 82 | 09/11/97 (25) | 90 | 1.76 | 70 | QPR | 7.17 | 15140 | | | | 0 | 0 | 2865 | 7 | +2 | |
| QXF | > | Djibril SOW | CM | SUI | 64 | 96 | 06/02/97 (26) | 88 | 1.84 | 70 | QPR | 7.08 | 15880 | | | | 0 | 0 | 4600 | 3 | +3 | |
| KYE | > | Boulaye DIA | CS | SEN | 63 | 96 | 16/11/96 (26) | 92 | 1.80 | 75 | QPR | 6.92 | 15240 | | | | 0 | 0 | 4635 | 32 | +2 | |
| Anderlecht < > 3,220,000 Wolves |
| LCH | < | Naby Deco KEÏTA | CM | GUI | 63 | 0 | 10/02/95 (28) | 81 | 1.72 | 68 | Anderlecht | | | | | | | | 3510 | | | |
| Cardiff City < > 1,720,000 WBA |
| VJX | < | Jed WALLACE | RW/AM | ENG | 58 | 94 | 26/03/94 (29) | 94 | 1.78 | 68 | Cardiff City | 6.95 | 5300 | | | | 1 | 0 | 1550 | 2 | +1 | |
| AZ < > 1,630,000 Shrewsbury Town |
| AQF | < | Sontje HANSEN | St | NED | 49/53 | 1 | 18/05/02 (21) | 73 | | | AZ | | | | | | | | 1670 | | | |
| 480,000 < > Rochdale |
| CQZ | > | Jay DASILVA | LWB | ENG | 55 | 97 | 22/04/98 (25) | 91 | 1.70 | 64 | Rochdale | | 3350 | | | | 0 | 0 | 865 | 0 | +1 | |
| Loan/transfer listed |
| GUT | - | Linus GECHTER | CB | GER | 54 | 45 | 27/02/04 (19) | 89 | | | Wrexham | 6.33 | 1910 | 7 | | T | 12 | 0 | 1355 | 0 | Y | |
| PHF | - | Jonny EVANS | CB | NIR | 64 | 88 | 03/01/88 (35) | 94 | 1.87 | 77 | Tranmere Rovers | 6.83 | 23800 | | | T | 0 | 0 | 270 | 0 | +1 | |
| EGK | - | Joe GOMEZ | CB/RB | ENG | 63 | 92 | 23/05/97 (26) | 93 | 1.85 | 77 | Tranmere Rovers | 6.50 | 14440 | | | T | 0 | 0 | 2705 | 0 | +4 | |
| PBK | - | Tom DAVIES | CM | ENG | 61 | 94 | 30/06/98 (24) | 81 | 1.80 | 70 | Tranmere Rovers | | 9780 | | | T | 0 | 0 | 3330 | 0 | +4 | |
| QXS | - | Bartlomiej DRAGOWSKI | Gk | POL | 62 | 95 | 19/08/97 (25) | 86 | 1.91 | 74 | Blackpool | | 14400 | | | T | 0 | 0 | 2850 | 0 | +1 | |
| RHC | - | Sergio REGUILÓN Rodriguez | LWB | ESP | 63 | 95 | 16/12/96 (26) | 88 | 1.76 | 64 | Blackpool | 7.03 | 20600 | | | T | 2 | 0 | 2705 | 3 | +1 | |
| IHL | - | DAVID Mota Veiga Teixeira CARMO | CB/DM | POR | 61 | 95 | 19/07/99 (23) | 81 | 1.94 | 76 | Wolves | | 5970 | | | T | 0 | 0 | 2555 | 0 | +1 | |
| LTB | - | REINIER Jesus Carvalho | AM | BRA | 57/59 | 46 | 19/01/02 (21) | 76 | 1.85 | 72 | Wolves | | 3640 | | | T | 0 | 0 | 3455 | 0 | Y | |
| Released |
| UZW | 25+ | Levi SUTTON | CM | ENG | 42 | 11 | 24/03/96 (27) | 95 | 1.80 | 74 | Harrogate Town | | | | | | | | 95 | | | |
| HZN | 25+ | MARCOS PAULO Costa do Nascimento | CS | POR | 58 | 5 | 01/02/01 (22) | 91 | 1.85 | 76 | São Paulo | | | | | | | | 3145 | | | |
| JNN | 16 | Matt PHILLIPS | W/WS | SCO | 57 | 3 | 13/03/91 (32) | 95 | 1.82 | 80 | WBA | | | | | | | | 850 | | | |
| DVB | 16 | Ignacio Peña Sotorres, IÑAKI PEÑA | Gk | ESP | 55 | 12 | 02/03/99 (24) | 90 | 1.84 | 78 | Barcelona | | | | | | | | 1130 | | | |
| Loan callbacks |
| BSW | 1 | José DIOGO DALOT Teixeira | RWB | POR | 65 | 93 | 18/03/99 (24) | 89 | 1.83 | 76 | Forest Green | 7.20 | 10260 | | | | 1 | 0 | 4025 | 1 | +2 | |
| CHR | - | Brian BROBBEY | CS | NED | 62 | 94 | 02/02/02 (21) | 91 | 1.80 | 72 | Wrexham | 6.65 | 6760 | | | | 3 | 0 | 6215 | 13 | +5 | |
| TDW | - | Sander BERGE | CM | NOR | 60 | 95 | 18/02/98 (25) | 91 | 1.90 | 88 | FC Halifax | 7.25 | 16340 | | | | 0 | 0 | 2720 | 0 | +1 | |
| VLF | - | James GARNER | CM | ENG | 59 | 81 | 13/03/01 (22) | 95 | | | Tranmere Rovers | 7.22 | 7390 | | | | 3 | 0 | 3130 | 2 | +3 | |
| UYT | - | Mohammed DARAMY | RW/St | DEN | 60 | 97 | 07/01/02 (21) | 90 | 1.80 | 71 | FC Halifax | 6.50 | 9310 | | | | 0 | 0 | 3995 | 4 | +3 | |
| DTH | - | James HILL | CB | ENG | 49/52 | 94 | 10/01/02 (21) | 74 | 1.84 | 73 | Northampton Town | | 620 | | | | 0 | 0 | 830 | 0 | Y | |
| OJN | - | Levi COLWILL | CB/LB | ENG | 58 | 83 | 26/02/03 (20) | 92 | 1.87 | 75 | Tranmere Rovers | 7.02 | 2650 | | | | 7 | 0 | 2225 | 2 | Y | |
