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| Transfers |
 Bellinzona < > 200,000  Preston North End |
| LEJ | < | Harvey WHITE | DM | ENG | 46 | 2 | 19/09/01 (23) | 84 | 1.71 | 60 | Bellinzona | | | | | | | | 230 | | | |
| Southampton < > 390,000 Preston North End |
| NZK | < | Jamie CUMMING | Gk | ENG | 49 | 92 | 04/09/99 (25) | 93 | 1.88 | 74 | Southampton | | 1410 | | | | 0 | 0 | 395 | 0 | +3 | |
 Fuenlabrada < > Morecambe |
| SWO | < | Eliezer MAYENDA | CS | ESP | 50 | 94 | 08/05/05 (19) | 88 | | | Morecambe | | 900 | | | | 0 | 0 | 1295 | 0 | Y | (t.19, Fuenlabrada) |
 Panevezys < > Morecambe |
| OFV | < | Bright ARREY-MBI | CB | GER | 51 | 95 | 26/03/03 (21) | 81 | 1.87 | 80 | Morecambe | 6.10 | 1100 | | | | 0 | 0 | 710 | 0 | Y | (t.19, Panevezys) |
| 135,000 < > Stevenage |
| ANO | > | Igor TYJON | St | ENG | 38 | 89 | 20/03/08 (16) | 93 | | | Stevenage | | 160 | | | | 0 | 0 | 280 | 0 | Y | |
| Yeovil Town 7,000,000 < > Manchester United |
| FZS | > | Mehdi TAREMI | St | IRN | 65 | 98 | 18/07/92 (32) | 87 | 1.86 | 75 | Manchester United | 6.55 | 21600 | | | | 0 | 0 | 3400 | 18 | +1 | |
 Brest < > 3,110,000 Manchester United |
| KFV | < | Hakim ZIYECH | AM/W | MAR | 63 | 1 | 19/03/93 (31) | 89 | 1.81 | 65 | Brest | | | | | | | | 2810 | | | |
 Cruzeiro < > 2,440,000 Manchester United |
| JFT | < | ROBERTO FIRMINO Barbosa de Oliveira | CS | BRA | 63 | 15 | 02/10/91 (32) | 87 | 1.81 | 75 | Cruzeiro | | | 8 | | | | | 2525 | | | |
 Akhmat < > 2,900,000 Portsmouth |
| XFZ | < | Matías Emanuel GODOY | St | ARG | 54/56 | 14 | 10/01/02 (22) | 77 | 1.72 | 67 | Akhmat | | | | | | | | 2345 | | | |
| Bayer Leverkusen < > 2,530,000 Portsmouth |
| FJD | < | Lassina TRAORÉ | CS | BFA | 56/58 | 7 | 12/01/01 (23) | 76 | 1.83 | 64 | Bayer Leverkusen | | | | | | | | 2815 | | | |
 AA Gent 1,000,000 < > Notts County |
| MDD | > | Max DEAN | CS | ENG | 46 | 97 | 21/02/04 (20) | 92 | | | Notts County | | 540 | | | | 0 | 0 | 650 | 0 | Y | |
 Sparta 6,500,000 < > Notts County |
| CSA | < | Anton STACH | CM | GER | 63 | 1 | 15/11/98 (25) | 88 | 1.92 | 86 | Sparta | | | | | | | | 4215 | | | |
| NKJ | > | Sven MIJNANS | CM/RW | NED | 64 | 94 | 09/03/00 (24) | 92 | 1.79 | 70 | Notts County | | 16480 | | | | 0 | 0 | 5145 | 0 | +3 | |
 El Nacional < > 3,870,000 Port Vale |
| LXF | < | Pervis Josue ESTUPIÑAN Tenorio | LB | ECU | 64 | 15 | 28/01/98 (26) | 94 | 1.75 | 79 | El Nacional | | | | | | | | 3125 | | | |
| 2,850,000 < > Swindon Town |
| MRO | > | Tommy SETFORD | Gk | ENG | 37 | 94 | 13/03/06 (18) | 93 | | | Swindon Town | | 150 | | | | 0 | 0 | 85 | 0 | Y | |
| Hereford 3,750,000 < > Swindon Town |
| DBJ | > | RODRIGO Martins GOMES | WB/W | POR | 60 | 97 | 07/07/03 (21) | 95 | 1.75 | 67 | Swindon Town | 6.89 | 8240 | | | | 0 | 0 | 2715 | 4 | +4 | |
| Yeovil Town 8,125,000 < > Swindon Town |
| NKG | > | Abdul FATAWU | W | GHA | 61 | 96 | 08/03/04 (20) | 82 | 1.77 | 73 | Swindon Town | | 5370 | | | | 0 | 0 | 5045 | 0 | Y | |
 Hearts < > 2,620,000 Forest Green |
| MIX | < | Greg TAYLOR | DM/LB | SCO | 63 | 10 | 05/11/97 (26) | 91 | 1.74 | 62 | Hearts | | | | | | | | 2705 | | | |
| St.Mirren < > 1,790,000 Forest Green |
| RHU | < | David TURNBULL | CM | SCO | 57 | 12 | 10/07/99 (25) | 91 | 1.77 | 73 | St.Mirren | | | | | | | | 1740 | | | |
| St.Mirren 2,250,000 < > Forest Green |
| OCO | > | Kevin NISBET | CS | SCO | 56 | 72 | 08/03/97 (27) | 88 | 1.80 | 77 | Forest Green | | 4670 | | | | 0 | 0 | 1535 | 0 | +4 | |
| Hibernian 300,000 < > Bradford City |
| MVQ | > | Rory WHITTAKER | RB | SCO | 39 | 90 | 10/08/07 (17) | 95 | | | Bradford City | | 180 | | | | 0 | 0 | 140 | 0 | Y | |
| Newport County < > 560,000 Bradford City |
| LDJ | < | Charlie SAVAGE | CM | WAL | 48 | 15 | 02/05/03 (21) | 92 | | | Newport County | | | | | | | | 675 | | | |
| Dundee 600,000 < > Bradford City |
| SND | > | Ethan INGRAM | RWB | ENG | 48 | 97 | 16/04/03 (21) | 86 | | | Bradford City | | 1180 | | | | 0 | 0 | 440 | 0 | +4 | |
| Plymouth Argyle 1,350,000 < > Sheffield United |
| GUG | > | Karamoko DEMBÉLÉ | RW | ENG | 50 | 94 | 22/02/03 (21) | 91 | 1.61 | 55 | Sheffield United | | 1810 | | | | 0 | 0 | 915 | 0 | +4 | |
| Northampton Town 1,500,000 < > Sheffield United |
| UNK | > | Cody DRAMEH | RWB | ENG | 54 | 94 | 08/12/01 (22) | 92 | 1.75 | 69 | Sheffield United | | 3140 | | | | 1 | 0 | 1010 | 0 | +4 | |
 Rijeka < > 820,000 Blackburn Rovers |
| AFE | < | Emanuel AIWU | CB | AUT | 55 | 10 | 25/12/00 (23) | 91 | 1.84 | 77 | Rijeka | | | | | | | | 1050 | | | |
| Colchester United 400,000 < > Blackburn Rovers |
| LQQ | > | Brad IHIONVIEN | CS | ENG | 41 | 83 | 23/12/03 (20) | 88 | | | Blackburn Rovers | | 230 | | | | 0 | 0 | 295 | 0 | Y | |
 Ventforet Kofu < > Blackburn Rovers |
| HWE | < | Leon BALOGUN | RB/CB | NGA | 57 | 2 | 28/06/88 (36) | 95 | 1.90 | 81 | Ventforet Kofu | | | | | | | | F/t | | | |
| KV Kortrijk < > 2,500,000 Cheltenham Town |
| NMQ | < | Leander DENDONCKER | DM/CB | BEL | 62 | 8 | 15/04/95 (29) | 91 | 1.88 | 79 | KV Kortrijk | | | | | | | | 1925 | | | |
| 150,000 < > Reading |
| PQL | > | Adam SENIOR | CB | ENG | 41 | 97 | 20/01/02 (22) | 88 | 1.83 | 68 | Reading | | 500 | | | | 0 | 0 | 85 | 0 | +4 | |
| 85,000 < > Reading |
| WFA | > | Finlay ARMSTRONG | FB | ENG | 39 | 78 | 05/03/03 (21) | 93 | | | Reading | | 370 | | | | 0 | 0 | 60 | 0 | +4 | |
| 65,000 < > Reading |
| WIS | > | Finn COUSIN-DAWSON | CB | NIR | 39 | 81 | 04/07/02 (22) | 97 | 1.83 | 71 | Reading | | 360 | | | | 0 | 0 | 45 | 0 | +4 | |
| 2,150,000 < > Swansea City |
| RFE | < | Kees SMIT | CM | NED | 40/49 | 2 | 21/01/06 (18) | 62 | 1.80 | 66 | | | | | | | | | 1045 | | | |
| Bournemouth < > Blackpool |
| LLW | > | Ramy BENSEBAINI | LWB | ALG | 65 | 98 | 16/04/95 (29) | 90 | 1.86 | 75 | Blackpool | 7.36 | 21600 | | | | 2 | 0 | 2975 | 9 | +1 | |
| FFG | < | Aster VRANCKX | CM | BEL | 61/62 | 94 | 04/10/02 (21) | 78 | 1.83 | 78 | Bournemouth | | 10760 | | | | 0 | 0 | 5325 | 0 | +1 | |
| WBA 5,250,000 < > Wolves |
| KMO | > | Jonas HOFMANN | RW/AM | GER | 66 | 97 | 14/07/92 (32) | 86 | 1.76 | 65 | Wolves | 7.42 | 28520 | | | | 3 | 0 | 3385 | 11 | +1 | |
| Loan/transfer listed |
| TWU | - | Ben WILSON | Gk | ENG | 54 | 94 | 09/08/92 (32) | 90 | 1.86 | 74 | Stevenage | | 3480 | | | T | 0 | 0 | 460 | 0 | | |
| RIX | - | José Heriberto IZQUIERDO Mena | W | COL | 56 | 95 | 07/07/92 (32) | 89 | 1.71 | 75 | Stevenage | 6.77 | 4130 | | | T | 6 | 0 | 720 | 6 | | |
| AGL | 1 | Isaiah JONES | RW/RWB | GUY | 58 | 94 | 26/06/99 (25) | 92 | | | Stevenage | 6.95 | 6320 | | | T | 0 | 0 | 2025 | 0 | +4 | |
| JNX | - | Ryan HARDIE | CS | SCO | 55 | 94 | 17/03/97 (27) | 95 | 1.77 | 62 | Stevenage | 6.83 | 2950 | | | T | 0 | 0 | 1320 | 3 | +1 | |
| QFN | - | Tommaso POBEGA | CM | ITA | 58/62 | 94 | 15/07/99 (25) | 74 | 1.88 | 75 | Blackpool | | 15840 | | | T | 0 | 0 | 3645 | 0 | +2 | |
| Released |
| API | 16 | Elliot EMBLETON | CM/DM | ENG | 48 | 2 | 02/04/99 (25) | 89 | 1.73 | 64 | Queen of the Sth. | | | | | | | | 420 | | | |
| LVR | 16 | Valentino LAZARO | WB | AUT | 63 | 5 | 24/03/96 (28) | 91 | 1.80 | 73 | Torino | | | | | | | | 2385 | | | |
| ODZ | 16 | George LLOYD | W | ENG | 45 | 2 | 11/02/00 (24) | 90 | 1.73 | 63 | Shrewsbury Town | | | | | | | | 265 | | | |
| Loan callbacks |
| QMN | - | Filip BUNDGAARD | LW/WS | DEN | 55 | 97 | 03/07/04 (20) | 85 | 1.76 | 62 | FC Halifax | 6.16 | 2220 | | | | 8 | 0 | 2115 | 6 | Y | |
| EAB | - | Lucas BERGVALL | CM | SWE | 56 | 96 | 02/02/06 (18) | 89 | | | FC Halifax | 6.73 | 2200 | | | | 6 | 0 | 2885 | 3 | Y | |
| KJE | - | Iván FRESNEDA Corraliza | RB | ESP | 59 | 95 | 28/09/04 (20) | 91 | | | Wrexham | 7.25 | 8430 | | | | 0 | 0 | 2570 | 4 | +5 | |
