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| Transfers |
 Coritiba < > 1,260,000  Norwich City |
| DQP | < | DEIVID WASHINGTON de Souza Eugênio | LW/CS | BRA | 51/54 | 8 | 05/06/05 (20) | 74 | | | Coritiba | | | | | | | | 1830 | | | |
| 450,000 < > Forest Green |
| LNV | > | Emmanuel LONGELO | LWB | ENG | 49 | 79 | 27/12/00 (24) | 85 | 1.84 | 70 | Forest Green | | 1390 | | | | 0 | 0 | 340 | 0 | +4 | |
 SC Freiburg 1,500,000 < > Forest Green |
| SNL | > | Alexander SCHWOLOW | Gk | GER | 60 | 84 | 02/06/92 (33) | 90 | 1.89 | 83 | Forest Green | | 8510 | | | | 0 | 0 | 1120 | 0 | +4 | |
 Metz < > Exeter City |
| EXV | < | Mikayil Ngor FAYE | CB/LB | SEN | 56 | 92 | 14/07/04 (21) | 88 | 1.86 | 79 | Exeter City | 7.38 | 3520 | | | | 1 | 1 | 1515 | 0 | Y | (t.4, Metz) |
 Napoli < > Exeter City |
| QTO | < | Wilfried GNONTO | LW/WS | ITA | 62 | 94 | 05/11/03 (21) | 92 | 1.70 | 72 | Exeter City | 6.44 | 12460 | | | | 4 | 0 | 5325 | 5 | +2 | (t.41, Napoli) |
| Bari < > Crystal Palace |
| IYM | < | Samson BAIDOO | CB | AUT | 60 | 94 | 31/03/04 (21) | 89 | 1.86 | 76 | Crystal Palace | | 8290 | | | | 0 | 0 | 2715 | 0 | +1 | (t.35, Bari) |
| Monza < > 3,730,000 Crystal Palace |
| HSX | < | Nicoló ZANIOLO | RW/St | ITA | 63 | 11 | 02/07/99 (26) | 88 | 1.90 | 79 | Monza | | | | | | | | 3980 | | | |
 Darvel < > 250,000 Cheltenham Town |
| DUO | < | Dylan WELLS | RW | SCO | 41 | 12 | 20/03/05 (20) | 90 | 1.70 | 65 | Darvel | | | | | | | | 240 | | | |
| Dunfermline 125,000 < > Cheltenham Town |
| GNC | > | John TOD | CB | SCO | 38 | 94 | 16/05/07 (18) | 95 | | | Cheltenham Town | | 150 | | | | 0 | 0 | 90 | 0 | Y | |
| 150,000 < > Reading |
| KKY | > | Oliver WHATMUFF | Gk | ENG | 37 | 72 | 06/11/07 (17) | 86 | | | Reading | | 130 | | | | 0 | 0 | 95 | 0 | Y | |
| Newport County 350,000 < > Reading |
| KNK | > | Jed WARD | Gk | ENG | 44 | 92 | 20/05/03 (22) | 91 | | | Reading | | 600 | | | | 0 | 0 | 230 | 0 | +4 | |
| Atalanta < > 1,620,000 Northampton Town |
| QYU | < | Wifred NDIDI | DM | NGA | 62 | 12 | 16/12/96 (28) | 94 | 1.84 | 70 | Atalanta | | | | | | | | 2060 | | | |
| Greuther Fürth 3,900,000 < > Northampton Town |
| SKR | > | Jens-Lys Michel CAJUSTE | CM | SWE | 61 | 84 | 10/08/99 (26) | 83 | 1.88 | 77 | Northampton Town | | 9880 | | | | 0 | 0 | 2970 | 0 | +4 | |
 KV Kortrijk 2,225,000 < > Northampton Town |
| NBE | > | Victor TORP Overgaard | CM | DEN | 57 | 86 | 30/07/99 (26) | 91 | | | Northampton Town | | 4990 | | | | 0 | 0 | 1640 | 0 | +4 | |
 Mirandés 2,000,000 < > Arsenal |
| CHI | > | Joaquín PANICHELLI | CS | ARG | 60 | 90 | 07/10/02 (23) | 86 | 1.86 | 82 | Arsenal | | 8790 | | | | 0 | 0 | 3780 | 0 | +3 | |
| OAG | < | Giorgian Daniel DE ARRASCAETA Benedetti | AM | URU | 63 | 1 | 01/06/94 (31) | 87 | 1.72 | 67 | Mirandés | | | | | | | | 2810 | | | |
| AVK | < | Thomas LEMAR | W/AM | FRA | 61 | 3 | 12/11/95 (29) | 89 | 1.70 | 58 | Mirandés | | | | | | | | 2440 | | | |
| Marseille 900,000 < > Arsenal |
| QAO | > | Robinio VAZ | CS | FRA | 42 | 74 | 17/02/07 (18) | 84 | 1.85 | 74 | Arsenal | | 300 | | | | 0 | 0 | 435 | 0 | Y | |
 Eyüpspor < > Morecambe |
| GKO | < | Taras MYKHAVKO | CB | UKR | 61 | 94 | 30/05/05 (20) | 91 | 1.85 | 69 | Morecambe | | 4800 | | | | 0 | 0 | 3425 | 0 | Y | (t.41, Eyüpspor) |
| Malmö FF 2,800,000 < > Morecambe |
| OZW | > | Daníel Tristan GUÐJOHNSEN | CS | ISL | 53 | 76 | 01/03/06 (19) | 91 | | | Morecambe | | 1530 | | | | 0 | 0 | 2010 | 0 | Y | |
| Bayern München 2,300,000 < > Morecambe |
| OOR | > | Adam AZNOU | LB | MAR | 55 | 97 | 02/06/06 (19) | 88 | 1.78 | 70 | Morecambe | | 4080 | | | | 0 | 0 | 1570 | 0 | +3 | |
| Hibernian < > 1,830,000 Leicester City |
| OTF | < | Kasey McATEER | W | IRL | 58 | 1 | 22/11/01 (23) | 90 | 1.77 | 69 | Hibernian | | | | | | | | 2420 | | | |
 Qingdao < > 4,230,000 Stevenage |
| KIG | < | Ibrahim OSMAN | W | GHA | 60 | 14 | 29/11/04 (20) | 90 | 1.77 | 64 | Qingdao | | | | | | | | 4370 | | | |
 Bryne < > 2,980,000 FC Halifax Town |
| XUB | < | Victor KRISTIANSEN | LB | DEN | 62 | 12 | 16/12/02 (22) | 93 | 1.81 | 77 | Bryne | | | | | | | | 3280 | | | |
| Tranmere Rovers < > Wrexham |
| QQU | < | Giorgio SCALVINI | CB | ITA | 63 | 82 | 11/12/03 (21) | 89 | 1.94 | 77 | Wrexham | | 19380 | 27 | | | 3 | 0 | 4165 | 0 | +5 | (t.10, Tranmere Rovers) |
 Jong Ajax 4,500,000 < > Swansea City |
| LCW | > | Abdellah OUAZANE | LW | NED | 41 | 92 | 15/01/09 (16) | 87 | | | Swansea City | | 260 | | | | 0 | 0 | 375 | 0 | Y | |
| Mallorca 6,050,000 < > Everton |
| KXI | > | JAN VIRGILI Tenas | LW | ESP | 49 | 88 | 26/07/06 (19) | 86 | | | Everton | | 310 | | | | 0 | 0 | 380 | 0 | Y | |
| SV Werder Bremen 2,050,000 < > Everton |
| JGP | > | Abdoul 'Karim' COULIBALY | CB/DM | GER | 42 | 99 | 23/05/07 (18) | 87 | | | Everton | | 270 | | | | 0 | 0 | 220 | 0 | Y | |
| FC Augsburg 7,050,000 < > Everton |
| QYA | > | Noahkai BANKS | CB | USA | 52 | 83 | 01/12/06 (18) | 90 | 1.92 | 83 | Everton | | 1340 | | | | 0 | 0 | 1095 | 0 | Y | |
| FGY | > | Mert KÖMÜR | CM/AM | GER | 54 | 81 | 17/07/05 (20) | 89 | 1.83 | 80 | Everton | | 1700 | | | | 0 | 0 | 1830 | 0 | Y | |
| Tranmere Rovers < > Cambridge United |
| FVP | < | Stefan POSCH | RB/CB | AUT | 64 | 95 | 14/05/97 (28) | 82 | 1.84 | 73 | Cambridge United | | 19900 | | | | 2 | 0 | 2760 | 0 | +1 | (t.41, Tranmere Rovers) |
| WVB | < | Khéphren THURAM-ULIEN | DM/CM | FRA | 63/65 | 99 | 26/03/01 (24) | 77 | 1.91 | 82 | Cambridge United | | 20280 | | | | 1 | 0 | 4025 | 0 | +1 | (t.41, Tranmere Rovers) |
| Hibernian < > 1,690,000 Cardiff City |
| VTM | < | Alex MATOS | CM/DM | ENG | 53 | 15 | 03/10/04 (21) | 86 | | | Hibernian | | | | | | | | 1435 | | | |
| Sheffield United < > 2,500,000 Blackburn Rovers |
| ECH | < | Baylee DIPEPA | CS | ENG | 42 | 95 | 12/01/07 (18) | 93 | | | Sheffield United | | 280 | | | | 0 | 0 | 435 | 0 | Y | |
| GFT | < | Karoy ANDERSON | CM/DM | JAM | 49 | 98 | 01/10/04 (21) | 92 | | | Sheffield United | 6.68 | 1550 | | | | 1 | 0 | 785 | 0 | +4 | |
| LIM | < | Ephraim YEBOAH | CS | ENG | 43 | 94 | 21/07/06 (19) | 92 | | | Sheffield United | | 630 | | | | 0 | 0 | 455 | 0 | +4 | |
| Spezia 460,000 < > Blackpool |
| KWP | > | Christian COMOTTO | CM | ITA | 41 | 96 | 25/04/08 (17) | 88 | | | Blackpool | | 260 | | | | 0 | 0 | 340 | 0 | Y | |
| Real Madrid 1,250,000 < > Wolves |
| DFS | > | DIEGO AGUADO Facio | CB | ESP | 43 | 93 | 07/02/07 (18) | 94 | 1.80 | 70 | Wolves | | 360 | | | | 0 | 0 | 265 | 0 | Y | |
| CZM | > | Victor VALDEPEÑAS Talavera | CB/LB | ESP | 45 | 74 | 20/10/06 (19) | 88 | | | Wolves | | 450 | | | | 0 | 0 | 335 | 0 | Y | |
| Fulham 1,800,000 < > Preston North End |
| LWR | > | Martial GODO | LW/AM | ENG | 47 | 94 | 14/03/03 (22) | 87 | 1.69 | 61 | Preston North End | | 1300 | | | | 1 | 0 | 510 | 1 | +3 | |
| 400,000 < > Charlton Athletic |
| DJE | > | Max CLEWORTH | CB | WAL | 50 | 84 | 09/08/02 (23) | 88 | 1.91 | 74 | Charlton Athletic | | 1480 | | | | 0 | 0 | 470 | 0 | | |
| 500,000 < > Rotherham United |
| CLY | > | Nathan BUTLER-OYEDEJI | W/St | ENG | 49 | 90 | 04/01/03 (22) | 87 | | | Rotherham United | | 1480 | | | | 0 | 0 | 700 | 0 | | |
 Aris 3,200,000 < > Manchester City |
| KQE | > | Igor DIVEEV | CB | RUS | 62 | 97 | 27/09/99 (26) | 89 | 1.90 | 83 | Manchester City | | 12260 | | | | 0 | 0 | 2340 | 1 | | |
| Valencia 4,000,000 < > Manchester City |
| VDK | > | César TÁRREGA Requeni | CB | ESP | 62 | 97 | 26/02/02 (23) | 84 | 1.94 | 78 | Manchester City | | 12160 | | | | 0 | 0 | 2950 | 0 | | |
| Loan/transfer listed |
| DXB | - | Rubin COLWILL | RW | WAL | 56 | 97 | 27/04/02 (23) | 95 | 1.66 | 57 | Sheffield United | 6.47 | 3750 | | | T | 0 | 0 | 1800 | 1 | +3 | |
| LFC | - | Freddie POTTS | CM | ENG | 53 | 95 | 12/09/03 (22) | 91 | 1.83 | 70 | Sheffield United | 6.56 | 1110 | | | T | 3 | 0 | 1290 | 0 | +3 | |
| CLC | - | Armel BELLA-KOTCHAP | CB | GER | 59 | 97 | 11/12/01 (23) | 92 | 1.90 | 87 | Sheffield United | 7.00 | 10520 | | | T | 0 | 0 | 1905 | 0 | +3 | |
| HWT | - | Jeremy Leonel SARMIENTO Morante | RW | ECU | 59/60 | 95 | 20/06/02 (23) | 79 | 1.83 | 73 | Swindon Town | | 5710 | | | T | 0 | 0 | 3245 | 0 | +2 | |
| Released |
| SZX | 25+ | Slobodan RUBEZIC | CB | MNE | 56 | 14 | 21/03/00 (25) | 89 | 1.92 | 84 | Chmel Blsany | | | | | | | | 1010 | | | |
| PXH | 25+ | Josh HINDS | W | ENG | 38 | 1 | 29/03/03 (22) | 86 | | | Histon | | | | | | | | 85 | | | |
| YJW | 25+ | Veljko ILIC | Gk | SRB | 56 | 15 | 21/07/03 (22) | 95 | | | Widzew Lódz | | | | | | | | 1550 | | | |
| LWN | 16 | Alejandro ITURBE Encabo | Gk | ESP | 54 | 1 | 02/09/03 (22) | 82 | 1.86 | 74 | Elche | | | | | | | | 1155 | | | |
| Loan callbacks |
| XTF | - | Matthijs DE LIGT | CB | NED | 66 | 61 | 12/08/99 (26) | 92 | 1.88 | 89 | Wrexham | 7.29 | 34460 | 2 | | | 4 | 0 | 4150 | 1 | +3 | |
